PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00930g04004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 413aa MW: 43467.5 Da PI: 8.2618 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Peinf101Scf00930g04004.1 30 FVCEICNKGFQRDQNLQLHRRGH 52 89*******************88 PP | |||||||
2 | zf-C2H2 | 17.5 | 1.1e-05 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H++ + Peinf101Scf00930g04004.1 106 WKCDKCSKNYAVQSDLKAHLKIC 128 58******************987 PP | |||||||
3 | zf-C2H2 | 11.1 | 0.0012 | 136 | 154 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Peinf101Scf00930g04004.1 136 DCGTMFSRRDSFITHRAFC 154 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 29 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.36E-8 | 29 | 52 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 30 | 52 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.3E-5 | 30 | 52 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 71 | 101 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 94 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.36E-8 | 101 | 126 | No hit | No description |
PROSITE profile | PS50157 | 8.912 | 106 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 65 | 106 | 126 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MNDSIGSGEV SVSSSVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ 60 RTSNEVKKRV YVCPEPTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKNYAVQSD 120 LKAHLKICGT KEYKCDCGTM FSRRDSFITH RAFCDVLTKD SEKAKIAVIT PNADEDPKVL 180 AVASSSPLPP PTPPAPPPAS EPESPVVLSP AAPEPLPPAV PSSTAVMSSD SPIQSSEPPS 240 SMEPISLCLA MNHGSSMFQP AGQERRQYAP APQPAMSATA LLQKAAQMGA TATNSSLLRG 300 LGLFSSSSSS HGQHEWSGRQ VDTDGASLAV GLGLGLPCDD GSGLKELMLG TPSVFGPKHP 360 TLDLLGLGMA AGGGPTPGLS ALITSMGSNL DVPAAAGSFG SGEISGKELG RNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-30 | 102 | 172 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 3e-30 | 102 | 172 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-161 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271958.2 | 0.0 | PREDICTED: protein indeterminate-domain 2 | ||||
Swissprot | Q9SCQ6 | 1e-139 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2R6S2F5 | 0.0 | A0A2R6S2F5_ACTCH; Protein indeterminate-domain like | ||||
STRING | VIT_04s0023g01430.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 4e-96 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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