PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00930g03013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 202aa MW: 23690.9 Da PI: 5.9503 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.9e-20 | 38 | 91 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Peinf101Scf00930g03013.1 38 KRKLSDEQVNLLEQSFGDEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 91 45899***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.957 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.0E-20 | 35 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-16 | 37 | 93 | No hit | No description |
SuperFamily | SSF46689 | 1.84E-18 | 37 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.6E-17 | 38 | 91 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-21 | 39 | 99 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.9E-6 | 63 | 72 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.9E-6 | 72 | 88 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MLELTRWTFF AVFILLGEVK PRRRRKKNRG EETGIMRKRK LSDEQVNLLE QSFGDEHKLE 60 SERKDKLASE LGLDPRQVAV WFQNRRARWK NKKLEEEYSK LKNEHDTNIV DKCRLENEVL 120 KLKEQLSEAE KEIQRLLMEK PDGVYSSNSP STSSLSMEAI EPPFLGEFGM GGLDITNGFY 180 VPENTYAQGL EWVNLYNIPY DM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 39 | RRRKKNRGEETGIMRKRK |
2 | 24 | 39 | RKKNRGEETGIMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016504930.1 | 4e-94 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 1e-69 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A1S4CUX7 | 9e-93 | A0A1S4CUX7_TOBAC; homeobox-leucine zipper protein ATHB-40-like | ||||
STRING | XP_009775418.1 | 5e-92 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 7e-71 | homeobox protein 40 |
Publications ? help Back to Top | |||
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