PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00925g20018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 143aa MW: 16607.2 Da PI: 9.6678 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 4e-16 | 42 | 133 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + + +s+v++ l + +fa+++ ++ + l+l+ sW vk+ ++ ++ +t+GWk Fv +n+Lk gD +vF++++ Peinf101Scf00925g20018.1 42 TFMQQSYVSEPYTLGIKITFARKYFEE--NYNYLMLRVHGRGSWPVKC--YRGTKTARITTGWKVFVLDNKLKCGDACVFEVIKG 122 55778999999*************644..344799999999*******..88888899***********************9975 PP .SEE..EEEEE CS B3 88 .sefelvvkvf 97 ++ v +f Peinf101Scf00925g20018.1 123 tDQLFIDVAIF 133 46655555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.8E-22 | 33 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-20 | 33 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.78E-14 | 38 | 134 | No hit | No description |
SMART | SM01019 | 6.7E-5 | 40 | 136 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.914 | 40 | 136 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-13 | 41 | 128 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MQEQLSKIAY DWNQKVRDKV VSAAYQRANS YALKSKNPFL VTFMQQSYVS EPYTLGIKIT 60 FARKYFEENY NYLMLRVHGR GSWPVKCYRG TKTARITTGW KVFVLDNKLK CGDACVFEVI 120 KGTDQLFIDV AIFREDGNTP NMC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613660.1 | 1e-45 | PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Refseq | XP_009613661.1 | 9e-46 | PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X3 | ||||
Refseq | XP_016490738.1 | 1e-45 | PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Refseq | XP_016490744.1 | 1e-45 | PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
Refseq | XP_016490750.1 | 1e-45 | PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X3 | ||||
Refseq | XP_018629844.1 | 1e-45 | PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 | ||||
TrEMBL | A0A0V0HLZ2 | 3e-46 | A0A0V0HLZ2_SOLCH; Putative B3 domain-containing protein-like (Fragment) | ||||
STRING | XP_009613660.1 | 4e-45 | (Nicotiana tomentosiformis) | ||||
STRING | PGSC0003DMT400043852 | 4e-45 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 6e-13 | related to vernalization1 1 |