PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00925g19016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 101aa MW: 11635.4 Da PI: 9.7975 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.7 | 1.8e-17 | 3 | 92 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 +s+v++ l + +fa++ ++ + ltl+ + sW vk+ ++++ +++GWk Fv +n+Lk gD++vF++++ ++ + Peinf101Scf00925g19016.1 3 QSYVSEPYTLPIKMTFAKKVFEE-NF-SYLTLRVQGRGSWPVKC--YRGKSFARISTGWKAFVFDNKLKRGDVCVFEVIKGtDQLNI 85 78999999999999***999544.23.3899*************..88888999***********************9977699999 PP EEEEE-S CS B3 93 vvkvfrk 99 v++fr+ Peinf101Scf00925g19016.1 86 DVTIFRE 92 9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 4.6E-4 | 1 | 93 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.337 | 1 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-19 | 1 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-17 | 1 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.92E-14 | 1 | 91 | No hit | No description |
Pfam | PF02362 | 2.3E-14 | 3 | 92 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MQQSYVSEPY TLPIKMTFAK KVFEENFSYL TLRVQGRGSW PVKCYRGKSF ARISTGWKAF 60 VFDNKLKRGD VCVFEVIKGT DQLNIDVTIF REAGNTPMHA D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230738.1 | 7e-33 | PREDICTED: uncharacterized protein LOC109211634 isoform X2 | ||||
TrEMBL | A0A1J6IMU6 | 2e-31 | A0A1J6IMU6_NICAT; B3 domain-containing transcription factor vrn1 | ||||
STRING | XP_009760928.1 | 3e-31 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-11 | related to vernalization1 1 |