PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00925g19015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 274aa    MW: 31743.8 Da    PI: 8.6136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00925g19015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.6e-131872651496
                               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                 +++p +fa+  g++    k +tl +e g++W+v l     +g   +++GW+ F k n+++ gD+++Fkl++r++++ v++v
  Peinf101Scf00925g19015.1 187 FVMTIPMSFARWTGIIDM--KRVTLVNEIGEEWRVDL--LHVGGCLHIRGGWSAFRKYNNICYGDTCLFKLIRRHGGSNVLQV 265
                               4589******99988854..47***************..444444679************************99888777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-145103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-146102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-79101No hitNo description
PfamPF023624.8E-811101IPR003340B3 DNA binding domain
SMARTSM010190.00211104IPR003340B3 DNA binding domain
PROSITE profilePS5086311.20924104IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-18171257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-16172267IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-8175258No hitNo description
SMARTSM010193.1E-10177271IPR003340B3 DNA binding domain
PfamPF023621.2E-10187264IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039189269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQVDPNKHPS FCKLLFKEGF MKKMLMPHSF VKKHKKMLAK TCLLKTNSAE MLWEAKIVKE  60
NSNYFICEGE WPQFVMQQKL ELGDILLFFL IDKSMFNVLV YTQKSYKSFC GGQLYEELSS  120
SSEEQEDNYI GPSRKSKKAK TEPKESSEDE AKSEEEENCQ KKTRFSMAGL DNEDPCYELV  180
IKKSHLFVMT IPMSFARWTG IIDMKRVTLV NEIGEEWRVD LLHVGGCLHI RGGWSAFRKY  240
NNICYGDTCL FKLIRRHGGS NVLQVQKVPK SNSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622139.21e-103PREDICTED: B3 domain-containing protein At5g18000-like
TrEMBLA0A1U8FRS91e-101A0A1U8FRS9_CAPAN; B3 domain-containing protein REM9-like
STRINGSolyc02g065340.1.16e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-14B3 family protein