PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00925g18012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Protein Properties

Length: 148aa MW: 17424.3 Da PI: 8.6085

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00925g18012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.8	2.4e-10	11	100	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k l ++ +++ + +p +f++eh++ kt l++ We k+ +r ks+ ++ ++ W +Fv ++L+ gD+++F l Peinf101Scf00925g18012.1 11 FCKLLFTEGFMNK--ILMPPSFVKEHKKM--LAKTCLLKTnVAEMLWEAKI-VREKSDYFICEGEWPQFVVHHKLELGDILLFFL 90 5566655444444..688******533..5556666654888***.6888888999999*****************9 PP -SSSEE..EE CS B3 85 dgrsefelvv 94 +++s f+ +v Peinf101Scf00925g18012.1 91 MDKSMFQVLV 100 9888885555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-14	5	103	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.28E-14	6	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.55E-8	9	101	No hit	No description
Pfam	PF02362	5.9E-8	11	101	IPR003340	B3 DNA binding domain
SMART	SM01019	0.003	11	106	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.096	22	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MQVDPNKHPS FCKLLFTEGF MNKILMPPSF VKEHKKMLAK TCLLKTNVAE MLWEAKIVRE 60 KSDYFICEGE WPQFVVHHKL ELGDILLFFL MDKSMFQVLV YTQKTYKNFC GRQLYEELSS 120 SASEEQEDNY IGPSRKSKKV KREPKESS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-52	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233940.3	2e-70	B3 domain-containing protein REM9-like isoform X1
TrEMBL	A0A1U8FRS9	1e-66	A0A1U8FRS9_CAPAN; B3 domain-containing protein REM9-like
STRING	Solyc02g065340.1.1	2e-67	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4888	13	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	1e-07	B3 family protein