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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf00925g17015.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family | B3 | ||||||||
| Protein Properties | Length: 853aa MW: 96277.3 Da PI: 8.8264 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 36.8 | 7.1e-12 | 3 | 78 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
++p +fa+++ ++ +++ le +sg++Wev++ + ++++l+kGW++F + + g f++F +dg+s+f v++f+
Peinf101Scf00925g17015.1 3 SIPEDFASRYCKNMQSP--AYLEVPSGKVWEVEV--VHSESQIWLAKGWQDFSDYYSISCGNFLMFGYDGHSCF--SVTIFD 78
79********5554455..9**************..888888********************************..999987 PP
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| 2 | B3 | 34.7 | 3.2e-11 | 277 | 342 | 17 | 88 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
+++ kfa+++ ++++++ +l+l+ + sW+vk+ + + + Wk Fv++n+Lk+gD++vF++++ +
Peinf101Scf00925g17015.1 277 SVSLKFARKY-LVENCG-DLVLRVPGMGSWSVKCAI--GTANAKIF--WKAFVQDNKLKVGDVCVFEVIKGT 342
67789**999.566676.9***************55..33332233..*******************88643 PP
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| 3 | B3 | 52.9 | 6.8e-17 | 569 | 659 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87
+ ps+ ++ l++ +f++++ g + ++s +l+l+ + sW+vk+ +++s+ + +GWk Fv +n+L++gD++vF++++
Peinf101Scf00925g17015.1 569 MQPSYISTPYVLSIRLSFIRKYlG-E-NCS-KLILRVPGRGSWSVKC--SQRSSDAKFLSGWKAFVLDNKLNVGDVCVFEVIKGt 648
556666777889**********54.4.466.9***************..55555555566********************99765 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
+ f l v++fr+
Peinf101Scf00925g17015.1 649 HPF-LDVTIFRA 659
777.89999885 PP
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| 4 | B3 | 47.5 | 3.3e-15 | 758 | 847 | 7 | 97 |
.-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
ps+v+ + +l++ + a+++ ++++ + +l+ +s rsW vk+ + ++ +++GWkeFv +n++k+gD++vF+l++rs
Peinf101Scf00925g17015.1 758 PSYVSLTgcqMQLSITLSIARKFF--PTRHSDPVLQVSSKRSWAVKC--TIGKHNAKFGSGWKEFVLDNNIKVGDVCVFELVNRS 838
444444444456677777777775..345557899************..666666779***********************9988 PP
EE..EEEEE CS
B3 89 efelvvkvf 97
+ ++v +f
Peinf101Scf00925g17015.1 839 KLLFNVIIF 847
886666665 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50863 | 13.169 | 1 | 80 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 0.0058 | 1 | 80 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.8E-15 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.0E-15 | 3 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 2.1E-8 | 3 | 78 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 3.43E-9 | 3 | 78 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 3.1E-15 | 230 | 352 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 6.7E-7 | 270 | 353 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 4.9E-11 | 273 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 5.4E-9 | 277 | 342 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 2.92E-13 | 277 | 350 | No hit | No description |
| PROSITE profile | PS50863 | 8.741 | 311 | 353 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.5E-21 | 556 | 659 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 4.71E-20 | 558 | 658 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 9.28E-17 | 563 | 658 | No hit | No description |
| SMART | SM01019 | 5.7E-14 | 564 | 660 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.688 | 565 | 660 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 6.9E-14 | 568 | 659 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 744 | 847 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.65E-20 | 745 | 848 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.80E-17 | 750 | 848 | No hit | No description |
| SMART | SM01019 | 1.6E-9 | 752 | 850 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.942 | 755 | 850 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.8E-13 | 756 | 847 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 853 aa Download sequence Send to blast |
MQSIPEDFAS RYCKNMQSPA YLEVPSGKVW EVEVVHSESQ IWLAKGWQDF SDYYSISCGN 60 FLMFGYDGHS CFSVTIFDLS AAEIEYPYDS VHGTFRAPKR EELDDSIEIL EDAEDDVSID 120 MQNNPEIVPF LEDIPKSHKG AKISDMMEHS AENIGRCPLG QSSKRKRQDG DSVYDVSVDM 180 QSVDSPFFTR KDQKTSEGCR KLTQKSKIVH DKDKAVMDKE RAIAYQRAKA FKSKNPFVIS 240 FMQPSYVLSP FNLVCYKLYK LYGLCSTLAN LTLFYPSVSL KFARKYLVEN CGDLVLRVPG 300 MGSWSVKCAI GTANAKIFWK AFVQDNKLKV GDVCVFEVIK GTKLIDVTIF AAAGSTSMHK 360 IAGEVLGVSN NSLPCSRAKI VQTKKLKQQR GGPHGFNSKI KGDKVEFSHN IVWTLEKIRH 420 LNLWREYGEG TEIEHAARIL GRCPSGQGSK RKKLEWEAED DVSFDIQTKY IKVEEAQEDV 480 ASPSFTRKTK SKKVFASYEQ NLFDNLVVIH HYINFEFLIE ESGESSRMYK RQSKIVYRKN 540 KTVVDKERTI GYQRAQAFKS KNPFIVSFMQ PSYISTPYVL SIRLSFIRKY LGENCSKLIL 600 RVPGRGSWSV KCSQRSSDAK FLSGWKAFVL DNKLNVGDVC VFEVIKGTHP FLDVTIFRAV 660 GSTPMDKVDA ESPGVDAVSC SEPKVHIRKM NLEKHQRGDS DGLASKVKED LGECTGKHVQ 720 QFDSSCIGRV VAQDMVLAYQ SAEAFTSENP FFIRFMQPSY VSLTGCQMQL SITLSIARKF 780 FPTRHSDPVL QVSSKRSWAV KCTIGKHNAK FGSGWKEFVL DNNIKVGDVC VFELVNRSKL 840 LFNVIIFPAA EGV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4i1k_A | 1e-15 | 539 | 853 | 23 | 146 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 1e-15 | 539 | 853 | 23 | 146 | B3 domain-containing transcription factor VRN1 |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975514 | 1e-38 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016490759.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
| TrEMBL | A0A1S4BPE8 | 0.0 | A0A1S4BPE8_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
| STRING | XP_009613656.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA759 | 18 | 93 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18990.1 | 2e-27 | B3 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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