PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00925g17011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 289aa    MW: 33384.4 Da    PI: 9.0983
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00925g17011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-152032771289
                               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                                s+ +++p +fa+e g++    k++tl +++g+ W+v +    +++++ +tkGW  F  +n++  gD+++Fkl++   +
  Peinf101Scf00925g17011.1 203 HSKYMTIPIEFARETGIIAM--KKMTLVNREGKGWQVDI--LSHDRWVHITKGWFAFRTDNNMSFGDTCLFKLIKGaGG 277
                               34569**********99955..58***************..*******************************9976343 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.1931103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-116101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-127102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-710101No hitNo description
SMARTSM010190.009412103IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-18188274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-18189284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.829192289IPR003340B3 DNA binding domain
CDDcd100173.42E-8193276No hitNo description
SMARTSM010193.3E-6195280IPR003340B3 DNA binding domain
PfamPF023622.5E-13203277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MPVDPNNSHP TFCKLLLKED FINKIVTAFI KKYKKMLGRT CLLKTNVTEK LWDVKIMREK  60
SDYFICEGEW TQFVVHHKLE LWDSLYFFLT AKSKFQVMIY SQKRYTTISK RQLQAMNEEL  120
SSSSESESEE EEDIGCSRKS KRVKVGIIDL SDSEKDKPSL PSGVAVEEAE VRGEGNDPKK  180
NRFNVVNLNS KVPYFENVVR DSHSKYMTIP IEFARETGII AMKKMTLVNR EGKGWQVDIL  240
SHDRWVHITK GWFAFRTDNN MSFGDTCLFK LIKGAGGDSN VLQVQKILN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561891.12e-80PREDICTED: B3 domain-containing protein REM9-like
TrEMBLA0A1U8FRS96e-79A0A1U8FRS9_CAPAN; B3 domain-containing protein REM9-like
STRINGSolyc02g065340.1.19e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-11B3 family protein