PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00925g17001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 783aa    MW: 88145.2 Da    PI: 9.6575
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00925g17001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.9e-105791898
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                              +p +fa+++ ++ +++    l  +sg++Wev++    + g+++l++GW++F +   +++g f++F ++g s f  +v +f+
  Peinf101Scf00925g17001.1  5 IPEHFASRYCKNMQNP--AYLVVPSGQVWEVEV--VHSEGQIWLAEGWQDFTDYYSIDSGYFLMFGYEGFSHF--NVIIFD 79
                              9********5454454..9999***********..999999*************************9987888..777765 PP
2B3443.8e-14223300588
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               + ps+vl+  +l+++ kfa ++ ++  + ++l+l+ +   sW+vk+++  +     +   Wk Fv++n+Lk+gD++vF++++ +
  Peinf101Scf00925g17001.1 223 MQPSYVLSPFNLSVSLKFAMKYFLE--NRVDLVLRVPGKGSWSVKCNF--GTANAKI--SWKAFVHDNKLKVGDVCVFEVIKGT 300
                               679*******************887..5689***************55..4433334..5*******************88643 PP
3B357.72.2e-18492583499
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v+k+ +l++  +fa+++  k ++s  ltl+ +   sW+vk++ r ++ + +l+ GWkeFv +n+Lk+gD++vF++++ +
  Peinf101Scf00925g17001.1 492 FMQPSYVSKKYILSIGLTFAKKYFRK-NCS-NLTLRVPGRGSWSVKCCLRTSD-AQILS-GWKEFVLDNKLKSGDVCVFEVIKCT 572
                               6789*******************655.465.9***************766665.45566.********************98778 PP

                               EE..EEEEE-S CS
                        B3  89 efelvvkvfrk 99 
                               e +  v++fr+
  Peinf101Scf00925g17001.1 573 ELSIDVTIFRA 583
                               88888888875 PP
4B350.24.5e-166987771497
                               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                +l++  + a+++   ++++ +l+l+ +s r+W vk+  + + +   l++GWkeFv +n++k+gD++vF+l++rs+  ++v +f
  Peinf101Scf00925g17001.1 698 IQLSITLSRARKFF--PTKHSDLVLQVSSKRTWAVKC--NLGTQNAKLSSGWKEFVLDNNIKVGDVCVFELVNRSKLLFNVIIF 777
                               56788888888886..345558***************..99999999************************9988886666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.111181IPR003340B3 DNA binding domain
SMARTSM010190.018181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-14481IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-14488IPR015300DNA-binding pseudobarrel domain
CDDcd100179.71E-9579No hitNo description
Gene3DG3DSA:2.40.330.102.1E-18211309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16212309IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.137219311IPR003340B3 DNA binding domain
CDDcd100174.51E-16220309No hitNo description
SMARTSM010191.4E-13222311IPR003340B3 DNA binding domain
PfamPF023622.5E-11223300IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-22481584IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-20484582IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-18487582No hitNo description
PROSITE profilePS5086312.647489584IPR003340B3 DNA binding domain
SMARTSM010192.3E-18489584IPR003340B3 DNA binding domain
PfamPF023622.5E-15491583IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-23674777IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-20675778IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-15680778No hitNo description
SMARTSM010199.7E-10685780IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633685780IPR003340B3 DNA binding domain
PfamPF023622.6E-14698777IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MMQGIPEHFA SRYCKNMQNP AYLVVPSGQV WEVEVVHSEG QIWLAEGWQD FTDYYSIDSG  60
YFLMFGYEGF SHFNVIIFDL SASEIEYPYN AVHGTRHAPK INQIELDDSI EILEDIPQSH  120
RGAKVADIID LSAVKIGQCP LGQCSKRKRE EDSEDDVSVD MQDVHSLSFR RKGRKTSESC  180
RKHTQKSKII HDNNNAAMDK ERSIAYQKAK AFKSNNPFII FFMQPSYVLS PFNLSVSLKF  240
AMKYFLENRV DLVLRVPGKG SWSVKCNFGT ANAKISWKAF VHDNKLKVGD VCVFEVIKGT  300
KLVDVTIFPA AGSRPMNKIC GQEVPGVSDS KNKIIKTDKP VPCSQPNMVL TKKLKQQRGG  360
SYGFNSNIKE EHGEGTEVGH SIEILGHHLS GKSIKKKRLE GEAEADASID VHTKSIKVEE  420
SQEDVASPSF TRKTKITDFE FLFEESGESS RMHPQQSKIV SGKNKKVMDK ERTIAYQRAK  480
AFKSNNPFIV SFMQPSYVSK KYILSIGLTF AKKYFRKNCS NLTLRVPGRG SWSVKCCLRT  540
SDAQILSGWK EFVLDNKLKS GDVCVFEVIK CTELSIDVTI FRAAGRTPLH KMDGEVPEVS  600
VGKNKIIKTE NSKIVHSRKW KIEKPQKGDS DGFPSKIKEK LGECTGKRMQ QSNSSPMGRV  660
VAQDMVLAYQ RAEAFTSENP FFICFMQPSY VSLARGQIQL SITLSRARKF FPTKHSDLVL  720
QVSSKRTWAV KCNLGTQNAK LSSGWKEFVL DNNIKVGDVC VFELVNRSKL LFNVIIFPAA  780
EGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1746178315146B3 domain-containing transcription factor VRN1
4i1k_B1e-1746178315146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755145e-44HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613656.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_016490759.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A1S4BPE80.0A0A1S4BPE8_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X1
STRINGXP_009613656.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-30B3 family protein