PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00911g05013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 280aa    MW: 32279.3 Da    PI: 8.4911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00911g05013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-17101146147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Peinf101Scf00911g05013.1 101 RGHWRPHEDAKLKELVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 146
                               899*****************************.***********996 PP
2Myb_DNA-binding56.75.7e-18153196146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Peinf101Scf00911g05013.1 153 RRAFSEEEEERLLTAHKMYGNK-WAMIARLFP-GRTDNAVKNHWHV 196
                               678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.14896147IPR017930Myb domain
SMARTSM007179.4E-15100149IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-28101194IPR009057Homeodomain-like
PfamPF002495.2E-16101146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-26102154IPR009057Homeodomain-like
CDDcd001671.11E-12104145No hitNo description
PROSITE profilePS5129426.819148202IPR017930Myb domain
SMARTSM007173.9E-15152200IPR001005SANT/Myb domain
PfamPF002491.0E-14153195IPR001005SANT/Myb domain
CDDcd001674.02E-11155195No hitNo description
Gene3DG3DSA:1.10.10.601.0E-20155201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
IFNLDLFCLV LEKRESLTHY STVASCDFQE MNFLTQHSLV MDYNKGRECL NNGSIDGKVL  60
ENPWIFHSMV EDEKGTKLNV ETEEVDLVGR KNNGGTKLCA RGHWRPHEDA KLKELVAQYG  120
PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLLTAHKM YGNKWAMIAR  180
LFPGRTDNAV KNHWHVIMAR KHREQNSVYR RRKPSNMQQF HSMGFPRVSG SDNAIQSNNL  240
NSDSTISSTN NNMDEHCAST CTDLSLTPSS SKASQEMNKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33952011107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-79HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489787.11e-117PREDICTED: transcription factor LAF1-like
TrEMBLA0A1S4BLS51e-116A0A1S4BLS5_TOBAC; transcription factor LAF1-like
STRINGXP_009587330.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-72myb domain protein 105