PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00909g05015.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YB

Protein Properties

Length: 161aa MW: 17417.4 Da PI: 5.0277

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00909g05015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	170.7	1.6e-53	24	117	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 +reqdr+lPian++rimkk lP+n+ki+kd+k+tvqecvsefisf+tseasdkcqrekrktingddll+alatlGfedy+eplk+ Peinf101Scf00909g05015.1 24 MREQDRYLPIANIGRIMKKGLPSNGKIAKDSKDTVQECVSEFISFITSEASDKCQREKRKTINGDDLLHALATLGFEDYIEPLKI 108 59********************************************************************************* PP NF-YB 86 ylkkyrele 94 yl++yre + Peinf101Scf00909g05015.1 109 YLTRYREGD 117 ****965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.2E-50	21	119	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-37	27	122	IPR009072	Histone-fold
Pfam	PF00808	1.0E-26	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.8E-20	58	76	No hit	No description
PROSITE pattern	PS00685	0	61	77	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.8E-20	77	95	No hit	No description
PRINTS	PR00615	3.8E-20	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MAEAASPGGG GGHEESGGSP QCSMREQDRY LPIANIGRIM KKGLPSNGKI AKDSKDTVQE 60 CVSEFISFIT SEASDKCQRE KRKTINGDDL LHALATLGFE DYIEPLKIYL TRYREGDAKG 120 SAMVGDASVR KDIVGNQLGP NTQFVYEGSF AQGLDYGNSQ M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-47	24	115	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-47	24	115	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604648.1	9e-92	PREDICTED: nuclear transcription factor Y subunit B-10-like
Refseq	XP_018627362.1	9e-92	PREDICTED: nuclear transcription factor Y subunit B-10-like
Swissprot	Q8VYK4	3e-68	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A2G2VG97	3e-91	A0A2G2VG97_CAPBA; Nuclear transcription factor Y subunit B-8
STRING	XP_009604648.1	3e-91	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	1e-67	nuclear factor Y, subunit B10

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]