PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00889g04005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 95aa MW: 10797.5 Da PI: 10.7792 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.2 | 6.1e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rq tfskRr g++KKA+ LS+LCd++va i+fss+g+l+ +ss Peinf101Scf00889g04005.1 9 KRIEDKSSRQATFSKRRGGLMKKAKHLSILCDVDVAAIVFSSRGRLFQFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.464 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.20E-32 | 2 | 65 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-27 | 2 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MGRKKVEIKR IEDKSSRQAT FSKRRGGLMK KAKHLSILCD VDVAAIVFSS RGRLFQFSSP 60 NSGKLGTENF VDVTYKVYRK QSFEGCITNR LEASY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 65 | 1 | 65 | MEF2C |
5f28_B | 3e-20 | 1 | 65 | 1 | 65 | MEF2C |
5f28_C | 3e-20 | 1 | 65 | 1 | 65 | MEF2C |
5f28_D | 3e-20 | 1 | 65 | 1 | 65 | MEF2C |
6bz1_A | 3e-20 | 1 | 65 | 1 | 65 | MEF2 CHIMERA |
6bz1_B | 3e-20 | 1 | 65 | 1 | 65 | MEF2 CHIMERA |
6bz1_C | 3e-20 | 1 | 65 | 1 | 65 | MEF2 CHIMERA |
6bz1_D | 3e-20 | 1 | 65 | 1 | 65 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352169.1 | 5e-32 | PREDICTED: agamous-like MADS-box protein AGL27 | ||||
Swissprot | Q8RU31 | 1e-23 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | A0A0V0HZX3 | 1e-30 | A0A0V0HZX3_SOLCH; Putative agamous-like MADS-box protein AGL27-like | ||||
STRING | Solyc05g015730.1.1 | 8e-31 | (Solanum lycopersicum) | ||||
STRING | XP_009790268.1 | 1e-30 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65070.1 | 1e-24 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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