PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00883g00007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 272aa    MW: 30555.8 Da    PI: 7.6151
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00883g00007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18184218135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Peinf101Scf00883g00007.1 184 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 218
                               *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-812269IPR016679Transcription factor, GATA, plant
SMARTSM004015.3E-15178228IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.266178214IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-14180242No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13182216IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.79E-13183230No hitNo description
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
PfamPF003207.7E-16184218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDVYGGSAPE VFRIDDLLDF SNEEIFSSGS SSKTTDFDLN HQYQPHQLHT DNNAAASYYD  60
ALVPNSADFT DKLCVPSDDV AELEWLSNFV EDSSSDYPSN SLTGTINLNS NNTTLHSKSR  120
SKRSRATTAN TSWTTSLQQA HKPIHENSNQ DPQNNTTMMI KIKKESSVNS RERSCQMPDI  180
PRKCTHCASE KTPQWRTGPL GPKTLCNACG VRFKSGRLVP EYRPAASPTF VLTQHSNSHR  240
KVMELRRQKG VVHQQQHQPP QQGMYGHHFQ VC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591827.11e-143PREDICTED: GATA transcription factor 4-like
RefseqXP_016439221.11e-143PREDICTED: GATA transcription factor 4-like
SwissprotO497411e-74GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A1S3XH151e-142A0A1S3XH15_TOBAC; GATA transcription factor
STRINGXP_009591827.11e-143(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-67GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]