PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00871g09019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 296aa MW: 33594.7 Da PI: 4.9047 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.4 | 5.4e-13 | 8 | 84 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p +fa+++ ++ ++ + le ++g+ Wev++ ++ ++++l+kGW++F + + g f++F ++grs+f +v++f+ Peinf101Scf00871g09019.1 8 QSIPVDFASRYCKN--IQTPVYLEVPDGEIWEVEV--VQSESQIWLAKGWQDFSDYYSISYGHFLMFGYNGRSDF--NVTIFD 84 58*********544..4456***************..999999********************************..999987 PP | |||||||
2 | B3 | 34.6 | 3.4e-11 | 206 | 292 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f +++++ + + l++pk a++ ++++ l+++ ++ rsW++k+ + +++ k+Fv +n++k+gD++vF+ + Peinf101Scf00871g09019.1 206 FICSMRPSYVSGASLTIPKAIASKLF--PARHNYLVVQVPNKRSWDLKC--TVGPKN-----AKKKFVLDNNIKVGDVCVFEQVT 281 45555666666677********9986..557779***************..666643.....459*****************887 PP SSEE..EEEEE CS B3 87 rsefelvvkvf 97 rse +++v +f Peinf101Scf00871g09019.1 282 RSELSFNVIIF 292 78888888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.464 | 1 | 86 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0015 | 6 | 86 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-16 | 6 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-9 | 8 | 84 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-16 | 9 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.73E-11 | 9 | 84 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-17 | 198 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.59E-16 | 199 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.12E-16 | 204 | 293 | No hit | No description |
Pfam | PF02362 | 8.6E-10 | 205 | 293 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.908 | 205 | 295 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.2E-9 | 206 | 295 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MSTTEYEQSI PVDFASRYCK NIQTPVYLEV PDGEIWEVEV VQSESQIWLA KGWQDFSDYY 60 SISYGHFLMF GYNGRSDFNV TIFDLSASEI EYPYNAAHDT RLAQESDQIE FHDFIEISDG 120 ARRRQEEEAD DDVSIEINTK GIMVEEPQEN EASPSSARKT KKSRGSCRAL KQQSKIVSAK 180 SEMVMEKESA TAYQRAKAFT SDNPFFICSM RPSYVSGASL TIPKAIASKL FPARHNYLVV 240 QVPNKRSWDL KCTVGPKNAK KKFVLDNNIK VGDVCVFEQV TRSELSFNVI IFPAAE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016490759.1 | 2e-93 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
Refseq | XP_019230776.1 | 1e-93 | PREDICTED: uncharacterized protein LOC109211655 isoform X2 | ||||
Refseq | XP_019230791.1 | 9e-95 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X4 | ||||
TrEMBL | A0A1S4BPE8 | 4e-92 | A0A1S4BPE8_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
STRING | XP_009613656.1 | 1e-91 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 8e-35 | B3 family protein |