PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00871g09018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 637aa    MW: 71782.8 Da    PI: 7.9272
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00871g09018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-11711461798
                               E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               ++p +fa+++ + + ++   + le ++g+ Wev++    + ++++l+kGW++F +   +  g f++F ++g s f  +v++f+
  Peinf101Scf00871g09018.1  71 SIPVDFASRYcE-NIQN--PVYLEVPDGKIWEVEV--VHSESQILLAKGWQDFSDYYSISCGHFLMFGYNGCSHF--NVTIFD 146
                               8*********63.4234..5***************..888889*************************9886777..999987 PP
2B351.12.4e-16291371488
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+ +k   l +p kfa+++ ++  +  +l+l+ +  rsW vk+ ++ ++ r  + +GWk Fv +n+Lk gD+++F++++ +
  Peinf101Scf00871g09018.1 291 FMQPSYISKPYSLFVPVKFARKYILE--NCHDLVLRVPGKRSWCVKCAFETTKAR--IHSGWKAFVLDNKLKFGDVCIFEVIKGT 371
                               466778888899***********766..3459***************88777766..99*********************88643 PP
3B342.98.5e-14542633297
                               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                        B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                               f   +++++ + + l++pk  a++    ++++  l+++ ++ rs  +k+  + +++     +GWk+Fv +n++k+gD++vF+ + 
  Peinf101Scf00871g09018.1 542 FICSMRPSYVSGASLTIPKAIASKLF--PARHNYLVVQVPNKRSLALKC--TVGPKNAKVVSGWKKFVLDNNIKVGDVCVFEQVT 622
                               45555666666677********9986..556779***************..88888878889********************887 PP

                               SSEE..EEEEE CS
                        B3  87 rsefelvvkvf 97 
                               rse +++v +f
  Peinf101Scf00871g09018.1 623 RSELSFNVIIF 633
                               78888888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.36455148IPR003340B3 DNA binding domain
SMARTSM010191.4E-458148IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-1669148IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1671159IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-1071146No hitNo description
PfamPF023625.3E-871146IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-22280379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-20281380IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-19286380No hitNo description
SMARTSM010191.4E-14287382IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521288382IPR003340B3 DNA binding domain
PfamPF023626.5E-14291371IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-21534633IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-20535634IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-15540634No hitNo description
PfamPF023621.4E-12541634IPR003340B3 DNA binding domain
PROSITE profilePS5086310.602541636IPR003340B3 DNA binding domain
SMARTSM010199.5E-10542636IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MANKQSVEGN SCSNMPQPMF YKIIMSPHEC TRLFLCCSCF ESVFVVNFYE RASYNLELVE  60
LNLNPLVMMQ SIPVDFASRY CENIQNPVYL EVPDGKIWEV EVVHSESQIL LAKGWQDFSD  120
YYSISCGHFL MFGYNGCSHF NVTIFDMSAS EIEYPYNAAR DTSHAQESDQ IELHEFIEIS  180
DGARRSHGGK EKVSDMVEGS IENGGQCPLG QSRKRSREEE DLEDGVSVDM LTERMEVEKS  240
EEDVASPSFT SSRAHKQQFK IVMMTKGHKE SSIAYQRAKT FKSENPFILS FMQPSYISKP  300
YSLFVPVKFA RKYILENCHD LVLRVPGKRS WCVKCAFETT KARIHSGWKA FVLDNKLKFG  360
DVCIFEVIKG TKLIDVTIFP AAESTSMHKI SGRKVPGVSD NSAPCSQSKI VHTKKLKQWR  420
GDSYGLNSKN KEECGEGTEV ERPVEILVHC PPGQGSKRKR QQEEAQDDIS TKINTKSITV  480
EEPQENEASP SSTRKTKKSR GSCRAHEQQS KIVSAKSEMV MEKESSIAYQ RAKAFTSDNP  540
FFICSMRPSY VSGASLTIPK AIASKLFPAR HNYLVVQVPN KRSLALKCTV GPKNAKVVSG  600
WKKFVLDNNI KVGDVCVFEQ VTRSELSFNV IIFPAAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1426963721144B3 domain-containing transcription factor VRN1
4i1k_B2e-1426963721144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230742.10.0PREDICTED: uncharacterized protein LOC109211634 isoform X3
TrEMBLA0A1J6IMU60.0A0A1J6IMU6_NICAT; B3 domain-containing transcription factor vrn1
STRINGXP_009613656.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-35B3 family protein