PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00871g08019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 443aa    MW: 50976.7 Da    PI: 6.7466
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00871g08019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.27.3e-14371151498
                               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                rl +p +fa+++ ++ +++  + le ++g++Wev++    + ++++l+kGW++F +   +  g f++F ++grs f  +v++f+
  Peinf101Scf00871g08019.1  37 TRLGIPVEFARRYCKNMQNP--VYLEVPDGEVWEVEV--VHSENQIWLAKGWQDFSDYYSISFGHFLMFGYNGRSHF--NVTIFD 115
                               5799*********5554454..***************..899999****************************9999..999998 PP
2B3512.7e-16265345488
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v+k   l +p k a+++ ++  + ++l+l+ +   sW+vk+ ++ ++ r  + +GWkeFv +n+Lk gD+++F++++ +
  Peinf101Scf00871g08019.1 265 FMQPSYVFKPYSLFVPVKIARKYFLE--NCRDLVLRVPGRGSWSVKCAFETTKAR--IHSGWKEFVLDNKLKFGDVCIFEVIKGT 345
                               6789*******************887..4569***************88777766..99*********************88643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-2022117IPR015300DNA-binding pseudobarrel domain
CDDcd100179.65E-1424115No hitNo description
PROSITE profilePS5086312.44924117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-1925117IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-1226117IPR003340B3 DNA binding domain
PfamPF023629.6E-1137115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-21254354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19255354IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-13262356IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155262356IPR003340B3 DNA binding domain
PfamPF023628.3E-14264345IPR003340B3 DNA binding domain
CDDcd100171.54E-17266354No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAKKQNGEGP SLRKSCTNNP QPMFYFYKII LSPHECTRLG IPVEFARRYC KNMQNPVYLE  60
VPDGEVWEVE VVHSENQIWL AKGWQDFSDY YSISFGHFLM FGYNGRSHFN VTIFDVNATE  120
IEYPYNAAHG THHAQERDQI ELDDSIKISE DVLRNHRGKE KSDMVEESIE NTGKCPLGQS  180
RKRHREEEDS EDDDSVYMLT ERMEVEKSEE DVASPSFTSE GQSEEQKQQC EIVYDEKKTL  240
MDKESSIAYQ RAKKFKSENP VILSFMQPSY VFKPYSLFVP VKIARKYFLE NCRDLVLRVP  300
GRGSWSVKCA FETTKARIHS GWKEFVLDNK LKFGDVCIFE VIKGTKLIDV TIFPAAGSTS  360
MHKISDRKVP EVSDNSAPCS LSKIVHTKKL KQQRGGSYGL NSKIKEEYGE GAEIEHPVEI  420
LGHCPLGAAK EKDWKRRQKV LFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1423735324140B3 domain-containing transcription factor VRN1
4i1k_B4e-1423735324140B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454453.10.0PREDICTED: uncharacterized protein LOC107778682 isoform X1
TrEMBLA0A1S3YQP50.0A0A1S3YQP5_TOBAC; uncharacterized protein LOC107778682 isoform X1
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-37B3 family protein