PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00857g08001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRF | ||||||||
Protein Properties | Length: 369aa MW: 40488.8 Da PI: 8.7362 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81 | 1e-25 | 139 | 182 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e Peinf101Scf00857g08001.1 139 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 182 79***************************************987 PP | |||||||
2 | QLQ | 50 | 9.1e-18 | 65 | 100 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ aQ+q+L+ Q+l+y++++a++PvPpeLl +++ Peinf101Scf00857g08001.1 65 SYFSLAQWQELELQALIYRHFIAGAPVPPELLHIVK 100 79******************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.0E-9 | 65 | 101 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.303 | 66 | 101 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.8E-12 | 66 | 99 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.141 | 139 | 183 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-21 | 140 | 182 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDFNLKQWRN QQHESEEEQP TNSATLLFDF NSSTSDSALP LFVTEPTNKL SDSTTTATKF 60 PRMGSYFSLA QWQELELQAL IYRHFIAGAP VPPELLHIVK KSLINSPSTY YFSHPYQQYP 120 QQYQQALLQS GYWGKAAMDP EPGRCRRTDG KKWRCSRDVV AGQKYCERHV HRGRSRSRKP 180 VEIPTPAATI SKHSGAVSQT LTKMAGHAAS TPDQFSLSGP SPSIDILHLS QRPSESNKGP 240 LEAQQDVSGD GKSSGQVLRH FFDDWPRQLQ NGDNAGNGST SVASATSLSI SMPGNPSSDF 300 SLKLSTGNDY NSNAQVSNVE RSIWGTNRVS SMGGPLAEAL RSSATNSSPT SVLHQLSRVS 360 TSEASYIST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246611.1 | 0.0 | PREDICTED: growth-regulating factor 3-like | ||||
Swissprot | Q8L8A7 | 8e-89 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A1J6J7F4 | 0.0 | A0A1J6J7F4_NICAT; Growth-regulating factor 3 | ||||
STRING | XP_009771979.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 5e-78 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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