PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00857g06001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 20464.9 Da PI: 4.3716 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.7e-18 | 23 | 72 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k++g+Wv+eIr+p r r++lg+f t+e+Aa a++ a+++l+g Peinf101Scf00857g06001.1 23 YRGIRKRKSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAVAYDVAALALKG 72 9******************9.....4489***********************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-28 | 22 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-19 | 22 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-31 | 22 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.51 | 22 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-8 | 23 | 34 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.78E-29 | 23 | 82 | No hit | No description |
Pfam | PF00847 | 6.7E-11 | 23 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-8 | 62 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MSAFGTSGGA SNSNGISGRH PMYRGIRKRK SSGKWVSEIR EPRSPNRIWL GTFPTPEMAA 60 VAYDVAALAL KGADAELNFP NSASSLPVPA TNSPRDIQAA AACAAAAIGA AGDALAIREV 120 GDNTLPVSRE AENLMTQGNV NEFMDEDLIF DMPNVIMNMA EGMLLSPPRF NYPDDDVTSA 180 ENTADQSLWN YP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 11 | 82 | 3 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590884.1 | 5e-88 | PREDICTED: ethylene-responsive transcription factor ERF024 | ||||
Refseq | XP_016496384.1 | 5e-88 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 6e-59 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A1S4C645 | 1e-86 | A0A1S4C645_TOBAC; ethylene-responsive transcription factor ERF024-like | ||||
STRING | XP_009590884.1 | 2e-87 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-47 | ERF family protein |