PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00840g00013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 304aa MW: 35390.2 Da PI: 7.4935

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00840g00013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.1	5.1e-51	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhP+d el+++yL +k++ ++l++ ++i+ev++yk++Pw+Lp+k+ +e+ewyfF++rd+ky++g+r+nr++ sgyWka Peinf101Scf00840g00013.1 11 LPPGFRFHPSDVELIMHYLINKAALRPLPA-NIIAEVELYKFNPWELPEKALFGEEEWYFFTPRDRKYPNGRRPNRMAVSGYWKA 94 79**************************.89***********8888899************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+++s+ +g+++glkk Lvfykg+ pkg+kt+W+mheyrl Peinf101Scf00840g00013.1 95 TGTDKPIFSSgGGKVIGLKKALVFYKGKPPKGSKTEWIMHEYRL 138 *****978899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-62	7	164	IPR003441	NAC domain
PROSITE profile	PS51005	58.937	11	164	IPR003441	NAC domain
Pfam	PF02365	7.3E-25	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MEKTSNSNIQ LPPGFRFHPS DVELIMHYLI NKAALRPLPA NIIAEVELYK FNPWELPEKA 60 LFGEEEWYFF TPRDRKYPNG RRPNRMAVSG YWKATGTDKP IFSSGGGKVI GLKKALVFYK 120 GKPPKGSKTE WIMHEYRLPQ NLWNSKKKWS MRLDDWVLCR VWRKTSMYDS RYDHINEPQQ 180 CCSTGKPYFT DTTPKLKLTD EDHLFKDCPM LPFLCEDTKI TAASSILQLK PEVDNNSPWY 240 DLFNSLDKKQ FEGTNEEGLT QREEQVPFAL GEDNTIGHIS SSNIDQLQLL NFNANYWDPT 300 IPYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-69	2	169	6	173	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:20005003}.
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070370.1	8e-96	NAC transcription factor 56-like
Swissprot	D2SMN4	4e-76	NAMB1_HORVS; NAC transcription factor NAM-B1
Swissprot	K4BNG7	8e-77	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A068UGJ2	7e-94	A0A068UGJ2_COFCA; Uncharacterized protein
STRING	EOY07798	3e-92	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-76	NAC domain containing protein 25

Publications ? help Back to Top
Jamar C, et al. NAM-1gene polymorphism and grain protein content in Hordeum. J. Plant Physiol., 2010. 167(6): p. 497-501 [PMID:20005003] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]