PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00838g06002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 394aa    MW: 43936.9 Da    PI: 4.756
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00838g06002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS200.31.2e-61662503191
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                                lLl+cAe v+ ++le+a++lL ++ el+sp g++ +R+aayf+eAL+ar+ +s  + y+ l+ ++ + ++s++ ++al+ ++ +
  Peinf101Scf00838g06002.1  66 GLLLQCAEYVHMENLEEASNLLPEIAELSSPFGSSAERVAAYFAEALSARIISSHLRFYSPLNLKTLTLTHSQKLFTALQSYNTI 150
                               58*********************************************************************************** PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP++kfsh taNqaI++ +ege++vHiiD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s+e le+tg rL++fA+++
  Peinf101Scf00838g06002.1 151 SPLIKFSHYTANQAIYQVLEGEDHVHIIDLDIMQGLQWPGLFQILSSRSKKLRSIKITGVGS----SRELLESTGGRLTEFANSF 231
                               **************************************************************....9****************** PP

                      GRAS 173 gvpfefnvlvakrledlel 191
                               g+pfef++l  ++ e+l+l
  Peinf101Scf00838g06002.1 232 GLPFEFQPLEGSDSETLRL 250
                               ********97777777765 PP

2GRAS142.34.9e-44244391224374
                      GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                                +e+L+l+  l+Pk++++veq+++h +++Fl+rf+eal+yysalfd+l  +l+ +s er++vE++l+g ei+n+va +g +r+ +
  Peinf101Scf00838g06002.1 244 DSETLRLLTLLRPKLITIVEQDLSH-GGNFLRRFVEALHYYSALFDALGDGLSVDSVERHMVEQQLFGCEIRNIVAVSGPKRTGE 327
                               4689*********************.789****************************************************8877 PP

                      GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  +e+W + l+++GF pv+ls + a+qa+lll +++ +gy++ ee+g+l lgWkd +L+++SaW+
  Peinf101Scf00838g06002.1 328 VP-VERWGDELKRVGFLPVSLSGTPAAQASLLLGMFP-RGYTLVEENGCLKLGWKDLSLLTASAWQ 391
                               65.9*********************************.***************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.30938372IPR005202Transcription factor GRAS
PfamPF035144.1E-5966250IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSSKRSIVEF TPVVSDEDPV LTKRPRHFPS SGDVDISEER EVEEEEEECE EAVLVDHDRI  60
GLRLLGLLLQ CAEYVHMENL EEASNLLPEI AELSSPFGSS AERVAAYFAE ALSARIISSH  120
LRFYSPLNLK TLTLTHSQKL FTALQSYNTI SPLIKFSHYT ANQAIYQVLE GEDHVHIIDL  180
DIMQGLQWPG LFQILSSRSK KLRSIKITGV GSSRELLEST GGRLTEFANS FGLPFEFQPL  240
EGSDSETLRL LTLLRPKLIT IVEQDLSHGG NFLRRFVEAL HYYSALFDAL GDGLSVDSVE  300
RHMVEQQLFG CEIRNIVAVS GPKRTGEVPV ERWGDELKRV GFLPVSLSGT PAAQASLLLG  360
MFPRGYTLVE ENGCLKLGWK DLSLLTASAW QPCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-135503925380Protein SCARECROW
5b3h_A1e-135503924379Protein SCARECROW
5b3h_D1e-135503924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235805.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-147SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1J6L0K60.0A0A1J6L0K6_NICAT; Scarecrow-like protein 23
STRINGXP_009804953.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-129GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]