PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00838g06002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 394aa MW: 43936.9 Da PI: 4.756 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 200.3 | 1.2e-61 | 66 | 250 | 3 | 191 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 lLl+cAe v+ ++le+a++lL ++ el+sp g++ +R+aayf+eAL+ar+ +s + y+ l+ ++ + ++s++ ++al+ ++ + Peinf101Scf00838g06002.1 66 GLLLQCAEYVHMENLEEASNLLPEIAELSSPFGSSAERVAAYFAEALSARIISSHLRFYSPLNLKTLTLTHSQKLFTALQSYNTI 150 58*********************************************************************************** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 sP++kfsh taNqaI++ +ege++vHiiD+di+qGlQWp L+q L+sR+++ s++iTgvgs s+e le+tg rL++fA+++ Peinf101Scf00838g06002.1 151 SPLIKFSHYTANQAIYQVLEGEDHVHIIDLDIMQGLQWPGLFQILSSRSKKLRSIKITGVGS----SRELLESTGGRLTEFANSF 231 **************************************************************....9****************** PP GRAS 173 gvpfefnvlvakrledlel 191 g+pfef++l ++ e+l+l Peinf101Scf00838g06002.1 232 GLPFEFQPLEGSDSETLRL 250 ********97777777765 PP | |||||||
2 | GRAS | 142.3 | 4.9e-44 | 244 | 391 | 224 | 374 |
GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308 +e+L+l+ l+Pk++++veq+++h +++Fl+rf+eal+yysalfd+l +l+ +s er++vE++l+g ei+n+va +g +r+ + Peinf101Scf00838g06002.1 244 DSETLRLLTLLRPKLITIVEQDLSH-GGNFLRRFVEALHYYSALFDALGDGLSVDSVERHMVEQQLFGCEIRNIVAVSGPKRTGE 327 4689*********************.789****************************************************8877 PP GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +e+W + l+++GF pv+ls + a+qa+lll +++ +gy++ ee+g+l lgWkd +L+++SaW+ Peinf101Scf00838g06002.1 328 VP-VERWGDELKRVGFLPVSLSGTPAAQASLLLGMFP-RGYTLVEENGCLKLGWKDLSLLTASAWQ 391 65.9*********************************.***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.309 | 38 | 372 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-59 | 66 | 250 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MSSKRSIVEF TPVVSDEDPV LTKRPRHFPS SGDVDISEER EVEEEEEECE EAVLVDHDRI 60 GLRLLGLLLQ CAEYVHMENL EEASNLLPEI AELSSPFGSS AERVAAYFAE ALSARIISSH 120 LRFYSPLNLK TLTLTHSQKL FTALQSYNTI SPLIKFSHYT ANQAIYQVLE GEDHVHIIDL 180 DIMQGLQWPG LFQILSSRSK KLRSIKITGV GSSRELLEST GGRLTEFANS FGLPFEFQPL 240 EGSDSETLRL LTLLRPKLIT IVEQDLSHGG NFLRRFVEAL HYYSALFDAL GDGLSVDSVE 300 RHMVEQQLFG CEIRNIVAVS GPKRTGEVPV ERWGDELKRV GFLPVSLSGT PAAQASLLLG 360 MFPRGYTLVE ENGCLKLGWK DLSLLTASAW QPCD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-135 | 50 | 392 | 5 | 380 | Protein SCARECROW |
5b3h_A | 1e-135 | 50 | 392 | 4 | 379 | Protein SCARECROW |
5b3h_D | 1e-135 | 50 | 392 | 4 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235805.1 | 0.0 | PREDICTED: scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-147 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A1J6L0K6 | 0.0 | A0A1J6L0K6_NICAT; Scarecrow-like protein 23 | ||||
STRING | XP_009804953.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10745 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-129 | GRAS family protein |
Publications ? help Back to Top | |||
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