PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00823g06016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRF | ||||||||
Protein Properties | Length: 345aa MW: 39553.1 Da PI: 8.7624 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.2 | 3.5e-24 | 80 | 123 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++ +k+CErH+hrgr+rsrk++e Peinf101Scf00823g06016.1 80 DPEPGRCRRTDGKKWRCSKEAYQESKYCERHMHRGRNRSRKPVE 123 79***************************************997 PP | |||||||
2 | QLQ | 56.7 | 7.1e-20 | 11 | 45 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+++++P+Pp+Ll i+ Peinf101Scf00823g06016.1 11 LFTASQFQELEHQALIYKYMVSGMPIPPDLLYTIR 45 6*****************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-9 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.373 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.0E-15 | 12 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.251 | 80 | 124 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.5E-20 | 81 | 123 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MMSSATRSGY LFTASQFQEL EHQALIYKYM VSGMPIPPDL LYTIRRSSLD SSLISSKLIL 60 HQPQHVGWNY LQLGFGKKID PEPGRCRRTD GKKWRCSKEA YQESKYCERH MHRGRNRSRK 120 PVEVMTLTKS TNTSTRTTTT LPTAIPISSS EQHHSFLYPH YSSSRPPAIG LASQDHTKSL 180 LDSRNSYDHG MKEEANKHVY YSEASGTMRS ASGSCSIVDD SWQLAPLTMG SPLGHLKQRT 240 NYSVSQNGHS YLHLQSLNNE SSKQHHQRQD QYQYYALGND VKTENIHMKI DTEDHQPKKV 300 MHHFFDELPR EDDKLSWLDS EDTFAKTHLS ISVPNSSHDF FITPN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 4e-64 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265537.1 | 1e-143 | PREDICTED: growth-regulating factor 5-like | ||||
TrEMBL | A0A314L388 | 1e-142 | A0A314L388_NICAT; Growth-regulating factor 5 | ||||
STRING | XP_009615805.1 | 1e-140 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-46 | growth-regulating factor 5 |