PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00820g01029.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 283aa    MW: 32836.8 Da    PI: 4.412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00820g01029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-16653148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd++l+ ++k++G  +W+  ++  g+ Rt+k+c++rw +yl
  Peinf101Scf00820g01029.1  6 KGPWSPEEDQKLKAYIKKYGIWNWSQMPKFAGLSRTGKSCRLRWMNYL 53
                              79******************99************************97 PP
2Myb_DNA-binding21.94.2e-07140168129
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                               +g+W++eEd++l+d++ ++G  +W+  ++
  Peinf101Scf00820g01029.1 140 KGAWSPEEDQKLKDYIMRYGIWNWRQMPK 168
                               79******************889987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.207157IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-23356IPR009057Homeodomain-like
SMARTSM007174.2E-14555IPR001005SANT/Myb domain
PfamPF002493.5E-14653IPR001005SANT/Myb domain
SuperFamilySSF466897.05E-22780IPR009057Homeodomain-like
CDDcd001671.30E-11853No hitNo description
Gene3DG3DSA:1.10.10.601.7E-55779IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-10135169IPR009057Homeodomain-like
PROSITE profilePS500906.62135173IPR017877Myb-like domain
SuperFamilySSF466893.09E-7138169IPR009057Homeodomain-like
SMARTSM007177.3139186IPR001005SANT/Myb domain
CDDcd001670.00202142169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDEIKKGPWS PEEDQKLKAY IKKYGIWNWS QMPKFAGLSR TGKSCRLRWM NYLSPDVKRG  60
PFSIDEVEIV IKTYQELGNS IITCQENPTY QDCYNNIISS SRVDQPIIMN MESPFILESN  120
PETSEIPQLH HQTDMAEIKK GAWSPEEDQK LKDYIMRYGI WNWRQMPKFA ERSADVASPC  180
SSIVTCEENQ MMDVMDFSKT YQDCYNVSSV VDQPATNMEN TAILESFPET SENIDIANCQ  240
LHQFDYSHPC SSLIDGYNFN SLDQFDMNSF WSHVIADSEH LNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-1438024100MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754424e-36HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755154e-36HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244663.15e-85PREDICTED: transcription factor WER-like
TrEMBLA0A1J6JBL11e-83A0A1J6JBL1_NICAT; Myb-related protein myb4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-29myb domain protein 17