PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00808g00054.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 383aa    MW: 43252.6 Da    PI: 8.7552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00808g00054.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-061941123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C++C++ F r  nL+ H r+H
  Peinf101Scf00808g00054.1 19 YVCEICNQGFQRDQNLQMHRRRH 41
                              9*********************9 PP
2zf-C2H216.32.7e-0596118123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k +  +s++k H++t+
  Peinf101Scf00808g00054.1  96 WVCEKCSKGYAVQSDYKAHLKTC 118
                               58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.8E-51642No hitNo description
Gene3DG3DSA:3.30.160.601.5E-51841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.971941IPR007087Zinc finger, C2H2
SMARTSM003550.00521941IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359021101IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SMARTSM003551906090IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-487117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556096123IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
PDAEVVSLSP KTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR ETPIVRKRVF  60
VCPEPTCLHH DPCHALGDLV GIKKHFRRKH SNHKQWVCEK CSKGYAVQSD YKAHLKTCGT  120
RGHSCDCGRV FSRVESFIEH QDACSMGRLR SESQSLHPPC LSRTASSTPS PSSDTNLTAP  180
WPSNLLKKNS IKEQHNLELQ LLTTTTSSSS PFDVSVSSKP NEDHSTYNLQ LSIGSSDFNE  240
SDQNATLSKN VSETRNLDAL KLAMSEKSYA EETRQQAKRQ IELAEQEFAN AKRIRQQAQA  300
ELDKANALKE HAIKQINSTL SQITCHSCKQ KFQAQRIVAS PTVPPSDHEN NSLALSYISS  360
ALTEGHHEVK NINQTEHLKL SQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-1892144355Zinc finger protein JACKDAW
5b3h_F5e-1892144355Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-111HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227007.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-147IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A2G2X7S50.0A0A2G2X7S5_CAPBA; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A2G3A0R50.0A0A2G3A0R5_CAPAN; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A2G3CXH80.0A0A2G3CXH8_CAPCH; Protein SHOOT GRAVITROPISM 5
STRINGXP_009777609.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-141C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]