PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00793g08016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18093.3 Da PI: 7.1352 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.8 | 1.3e-45 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca+dC +apyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqq Peinf101Scf00793g08016.1 12 PCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVSKMLQELPEHNRGDAVSSMVYEANARVRDPVYGCVGAISSLQQ 96 7************************************************************************************ PP DUF260 86 qleqlkaelallkee 100 q++ l+++la++++e Peinf101Scf00793g08016.1 97 QIDMLRTQLAVAQAE 111 **********99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.757 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-45 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MKDCGKNSSS SPCAACKLLR RRCAQDCLFA PYFPADEPHK FANVHKVFGA SNVSKMLQEL 60 PEHNRGDAVS SMVYEANARV RDPVYGCVGA ISSLQQQIDM LRTQLAVAQA EVVHLRIRQS 120 VGTNNSPTNS GSASHILDAH PNGYFHTDLD EDQSKNFNEP MWPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-47 | 8 | 113 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-47 | 8 | 113 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783465.1 | 1e-101 | PREDICTED: LOB domain-containing protein 4-like | ||||
Refseq | XP_016501014.1 | 1e-101 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 7e-64 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A1S4CJ26 | 2e-99 | A0A1S4CJ26_TOBAC; LOB domain-containing protein 4-like | ||||
TrEMBL | A0A1U7XAI8 | 2e-99 | A0A1U7XAI8_NICSY; LOB domain-containing protein 4-like | ||||
STRING | XP_009783465.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-66 | LOB domain-containing protein 4 |