PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00791g09030.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family CAMTA
Protein Properties Length: 1044aa    MW: 117429 Da    PI: 5.818
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00791g09030.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11802.8e-56201363118
                      CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 
                               +e ++rwl++ ei++iL+n++++++t e++ rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYa
  Peinf101Scf00791g09030.1  20 SEaQHRWLRPAEICEILQNYRNFHITPEAPYRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYA 104
                               4449********************************************************************************* PP

                      CG-1  87 hseenptfqrrcywlLeeelekivlvhylevk 118
                               h+ee+ +fqrr+yw+Le++l +iv+vhylevk
  Peinf101Scf00791g09030.1 105 HGEEDDNFQRRSYWMLEQDLMHIVFVHYLEVK 136
                               *****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.4715141IPR005559CG-1 DNA-binding domain
SMARTSM010768.2E-8118136IPR005559CG-1 DNA-binding domain
PfamPF038597.5E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.8E-6460547IPR013783Immunoglobulin-like fold
SuperFamilySSF812966.86E-18461547IPR014756Immunoglobulin E-set
PfamPF018339.3E-8461546IPR002909IPT domain
SuperFamilySSF484032.33E-16651752IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-16653754IPR020683Ankyrin repeat-containing domain
CDDcd002041.30E-14656750No hitNo description
PROSITE profilePS5029717.422658752IPR020683Ankyrin repeat-containing domain
SMARTSM002484300658687IPR002110Ankyrin repeat
PROSITE profilePS500888.79658690IPR002110Ankyrin repeat
PROSITE profilePS500889.484691723IPR002110Ankyrin repeat
SMARTSM002480.0036691720IPR002110Ankyrin repeat
SMARTSM002483300730759IPR002110Ankyrin repeat
SuperFamilySSF525406.64E-7861916IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000157.3865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.895866895IPR000048IQ motif, EF-hand binding site
PfamPF006120.004867886IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0016888910IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432889913IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4891910IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MAGSGSDPPG FRLDIKQILS EAQHRWLRPA EICEILQNYR NFHITPEAPY RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKA NVSSNRSIES AHSNYVKEYS LSDTFHGSHK KLASLKADSA  180
SLASTVTSAY EEAESEDSHQ VCSRFHSYPE LVSGMDSRLV ENRDTISKSY GSPLSSVEYP  240
SLPGIDGGGK CDLGNSASGP RRTNDLGSRA PVFERCSNGE VVSTHDFKNN MPVHGNWQFL  300
GQTVNQDLIA DSCYDLLNGF HSENLSSNQY TVRGQSYLYP DEQDEQQTEL NFQNLNSPME  360
VQADIIQENF MDMLGLGDYS TIKQPRLGSV KLEEGLNKSD SFSRWVAKEL EDVEELHMQS  420
TDRLSWNVID IEDDRSCVPS QLHVDSDSLV PSLSQEQLFS IIDFSPNWAY SSLETKVLIT  480
GRFLKSDCKV VECKWSCMFG EVEVPAEVLA DGVLRCHAPP HKPGVLPFYV TCSNRLACSE  540
VREFEYRLGP SREFGASNVS AIERHLLERF ESVMSLEPVS SCYSSDSPEA APEKQSTVNK  600
IICMMEEDMA DRPSDFDTSQ SKVKEDLFLE RKLRQNFYVW LVHQVTADGK GRTVLDDEGQ  660
GVLHLAAALG YDWALRPILA SGVSVDFRDM NGWTALHWAA FYGREKTVVG LVSLGASPGA  720
LTDPSAEFPL GRTPADLASA NRHKGISGFL AESSLTSHLS KLTVTDAKEE LASEVLGAKV  780
GETVTERVAV TSTGDDVPDV LSLKDSLAAI RNATQAAARI HQIFRVQSFQ RKQIIENNDN  840
ELSSDEHALS VVASRTCKLA QNNGIAHAAA IQIQKKFRGW NRRKEFLLIR QRIVKIQAHV  900
RGHQVRKKYK PIIWSVGILE KVILRWRRKG SGLRGFRSEA VMNKPSTEDD SLPEDDYDFL  960
KEGRKQTEVR MQKALARVKS MTQYPEARAQ YRRLLTAAEG LRETKEDGPT QVLENQKDAS  1020
YAEEDLFDVD NLLDEDTFMS IAFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A1e-13461551993calmodulin binding transcription activator 1
2cxk_B1e-13461551993calmodulin binding transcription activator 1
2cxk_C1e-13461551993calmodulin binding transcription activator 1
2cxk_D1e-13461551993calmodulin binding transcription activator 1
2cxk_E1e-13461551993calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600617.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S4BAF30.0A0A1S4BAF3_TOBAC; calmodulin-binding transcription activator 2-like isoform X1
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]