PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00791g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 253aa MW: 26629.5 Da PI: 4.9667 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.9 | 3.3e-14 | 117 | 152 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++R gp g+++LCnaCGl ++kkg Peinf101Scf00791g00024.1 117 CRHCGISSksTPQMRCGPAGPRSLCNACGLVWAKKG 152 *****99999************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.1E-4 | 7 | 42 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 11.592 | 7 | 42 | IPR010399 | Tify domain |
Pfam | PF06200 | 6.4E-8 | 17 | 41 | IPR010399 | Tify domain |
SMART | SM00401 | 3.8E-6 | 111 | 165 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-10 | 111 | 159 | No hit | No description |
CDD | cd00202 | 1.64E-12 | 117 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-12 | 117 | 157 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.4E-12 | 117 | 152 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEAAGTGCGA YDQVLLSFQG EIYVFDAVSP EKVQAVLLLL GESQVAATTD YVRPPQSPQA 60 TGDFPDRLNR PASRKRIRYS VRQEAARRMQ REKGRFTSSK PVSDEAGSSS ADWNEGCRHC 120 GISSKSTPQM RCGPAGPRSL CNACGLVWAK KGILRDLTEV PSPGAQDQTV KSCEQSDDEP 180 NGSDAMAAAP TIIQDGDNSL GSLTGLSKVP TPGAHNQSVK SGEKSNDEPN GSDTLAAAAI 240 STPYGDNPVV AAE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609389.1 | 2e-89 | PREDICTED: GATA transcription factor 28-like | ||||
Swissprot | Q8GXL7 | 2e-50 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A1S4B0D6 | 7e-84 | A0A1S4B0D6_TOBAC; GATA transcription factor 24-like | ||||
TrEMBL | A0A1U7X855 | 7e-84 | A0A1U7X855_NICSY; GATA transcription factor 24-like | ||||
STRING | XP_009609389.1 | 6e-89 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25226 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-53 | ZIM-like 1 |
Publications ? help Back to Top | |||
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