PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00782g12011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 497aa MW: 56779.3 Da PI: 4.7192 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 169.9 | 2e-52 | 129 | 496 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +lL + ea++++++ela+ ++ ++ +p g++++R+ + L a++ + + +++ +s++ a+k+f++ Peinf101Scf00782g12011.1 129 HHLLAAYGEAIENDHKELAEVIIRSIKGKINPLGESLERVCS----NLFAKIED------QESYLKQE---SSKNLEVAFKAFYQ 200 799999*********************************986....58889998......22222333...35666778999*** PP GRAS 87 vsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167 ++Pi kf+h++aN+aI ea+ ++ e++Hi+Dfd+++G+QWp+ ++a++++++ lR T +++ e++ + + eet++rL + Peinf101Scf00782g12011.1 201 IFPIGKFAHFAANSAIIEAMPSDaETIHIVDFDMGEGIQWPSVIEAMSQKRK---ALRFTSIKKTEEEstsDLCKFEETKRRLLD 282 ********************98889***********************9865...5******99888777677789********* PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.....vvvvve 243 +A+++ ++ +v + ++e+l+ ++ r+k+ E l+ n++++l ++ + ++ e+Lkl k+l ++ +v++ + Peinf101Scf00782g12011.1 283 YAKTVPFGLRLQV-EEMTTEELSSDMRRMKKrgkgSEWLVFNCMFKLPHMGKTMCRIQA--LEFLKLAKELLANssrkgLVTFGD 364 ***9888888887.7779999988888888888999**************955555555..9********9765445559***99 PP GRAS 244 qe....adh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleea 322 e +h n++++ f ++l yy ++f+sle +p+ e+r +E +l++++++ ++ e ++ + ++ +e Peinf101Scf00782g12011.1 365 GEamdeNSHnNTSTLSSFFNKKLIYYQSIFESLECYFPAYLaEARLAMESLFLAPQVCSFSWLQNWE------EMTSMSNSCGEI 443 87433334557779999999*****************99877***************9988777776......6777789***** PP GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373 G++ ++s+++ qak l+++ + ++e e+s+++vl Wk+ pLv vS W Peinf101Scf00782g12011.1 444 GLQGKTISQENLLQAKELVNERAtPLKVKIEeERSHQMVLEWKGTPLVKVSTW 496 *********************995444777756699999************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.341 | 102 | 475 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-50 | 129 | 496 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MMQSEQLLHN SWSSTFHQSD LYGIQIDPYE SQKHSLSYSS FNSNDQDFTS LFQDDVFDDL 60 SMDDLEFVDV CRWLNDSESE GNEKMKVSFD IQKDGDLWSP ALSGVSSETS ITLPSTNSKE 120 NMDTQMSLHH LLAAYGEAIE NDHKELAEVI IRSIKGKINP LGESLERVCS NLFAKIEDQE 180 SYLKQESSKN LEVAFKAFYQ IFPIGKFAHF AANSAIIEAM PSDAETIHIV DFDMGEGIQW 240 PSVIEAMSQK RKALRFTSIK KTEEESTSDL CKFEETKRRL LDYAKTVPFG LRLQVEEMTT 300 EELSSDMRRM KKRGKGSEWL VFNCMFKLPH MGKTMCRIQA LEFLKLAKEL LANSSRKGLV 360 TFGDGEAMDE NSHNNTSTLS SFFNKKLIYY QSIFESLECY FPAYLAEARL AMESLFLAPQ 420 VCSFSWLQNW EEMTSMSNSC GEIGLQGKTI SQENLLQAKE LVNERATPLK VKIEEERSHQ 480 MVLEWKGTPL VKVSTWM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-12 | 137 | 308 | 28 | 212 | Protein SCARECROW |
5b3h_A | 3e-12 | 137 | 308 | 27 | 211 | Protein SCARECROW |
5b3h_D | 3e-12 | 137 | 308 | 27 | 211 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016463435.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
Refseq | XP_018632222.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like isoform X1 | ||||
TrEMBL | A0A1S3ZG46 | 0.0 | A0A1S3ZG46_TOBAC; nodulation-signaling pathway 2 protein-like | ||||
STRING | PGSC0003DMT400068507 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 4e-22 | RGA-like protein 3 |