PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00766g09011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 323aa    MW: 36633.2 Da    PI: 8.1126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00766g09011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-171360148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+l++++  +G ++W+++++  g+ R++k+c++rw +yl
  Peinf101Scf00766g09011.1 13 RGLWSPEEDEKLIRYISSHGHNCWSSVPKLTGLQRCGKSCRLRWINYL 60
                              788*******************************************97 PP
2Myb_DNA-binding47.25.2e-1566109146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg++++ E+  + d+++ lG++ W+ Ia++++ gRt++++k++w++
  Peinf101Scf00766g09011.1  66 RGSFSEAEERTITDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                               899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-26463IPR009057Homeodomain-like
PROSITE profilePS5129425.547864IPR017930Myb domain
SuperFamilySSF466894.12E-2810107IPR009057Homeodomain-like
SMARTSM007177.6E-141262IPR001005SANT/Myb domain
PfamPF002492.0E-151360IPR001005SANT/Myb domain
CDDcd001673.54E-121660No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2464116IPR009057Homeodomain-like
PROSITE profilePS5129419.48365115IPR017930Myb domain
SMARTSM007172.0E-1465113IPR001005SANT/Myb domain
PfamPF002491.7E-1366109IPR001005SANT/Myb domain
CDDcd001672.50E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSHHCCSKQK VKRGLWSPEE DEKLIRYISS HGHNCWSSVP KLTGLQRCGK SCRLRWINYL  60
RPDVKRGSFS EAEERTITDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
VPNTHNLLSR NSTQNNKNNA SCKVKSTSVF TLETMSSSNK EVPMDMIKSS LAAFLPFPHN  180
SKTISTAAYN DNMNPINVPR TTTNIDFPRS CLMESTSNNY LSSLTPPGYG IINYENYCMW  240
AVSGVEPHDF GPSINGHEEM RIVEQGGGQV VQLQEKVFQA EEVYKINHDQ FNINGQKAYD  300
DDANFSFESV DSICIDDALR NLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622248.11e-129PREDICTED: transcription factor MYB86-like
RefseqXP_016470040.11e-129PREDICTED: transcription factor MYB86-like
SwissprotQ8LPH64e-67MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A1S4A0C31e-127A0A1S4A0C3_TOBAC; transcription factor MYB86-like
STRINGXP_009622248.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.16e-80myb domain protein 67