PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00740g02001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 348aa    MW: 39012.4 Da    PI: 6.9509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00740g02001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Peinf101Scf00740g02001.1 14 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                              678*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.063965IPR017930Myb domain
SMARTSM007173.3E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.8E-211687IPR009057Homeodomain-like
CDDcd001671.77E-121761No hitNo description
PROSITE profilePS500904.1826293IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-86588IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLINHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNNEL NFIEVHENSN LGIATEKPKP SASLVTMDRY  120
PNGMSSAVPP THEFFLNRFV TSHESSTATC KPLDLASYLS FQQLNYGSNI GLSMNPNTNP  180
LLFNSNSKNS EMVSHHQFNS NMPNDILPSI SNSILTSPVA AAASSSNIEL QRNSSFFDNN  240
AFSWGAADHC GKSEKGANNI HSSESDTEDI KWSEYLHTQF LPGNTSIHSH QTSIQHLYSE  300
KSGTQFTTEV SLSTTPWLPN QQQQPSLQTA DLYNKHFQRL PDAFGQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-1512872599MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754498e-44HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241228.11e-126PREDICTED: transcription factor MYB86-like
TrEMBLA0A1J6JPA41e-125A0A1J6JPA4_NICAT; Transcription factor myb86
STRINGXP_009628184.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-71myb domain protein 61