PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00738g02028.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 320aa    MW: 35332.5 Da    PI: 6.3998
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00738g02028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17245278134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C +C  tkTp+WR gp g+ktLCnaCG++y+k +
  Peinf101Scf00738g02028.1 245 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKKGR 278
                               99******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-702320IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.358239275IPR000679Zinc finger, GATA-type
SMARTSM004018.0E-17239289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.6E-15243278IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.28E-15243302No hitNo description
CDDcd002022.68E-14244291No hitNo description
PfamPF003202.3E-15245279IPR000679Zinc finger, GATA-type
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGSNFVDEID CNSFFDHMED LIEFSPENEC GDLDSTDYKD FPSIWNDPLP ESDPLFSGSH  60
SNSASDFSAE LSVPYEDIVQ LEWLSTFVED SFSCGGLTLG KENFPVNKEP SQSKFLTSSP  120
VSVLESSSSS SSSSSGAGKT LPPLSPYHRG PQRARSKRPR PSTFNPRPVI QLMSPTSSVT  180
ETTPQLFVAP GDSLESENFA ESPMKKIPKP AAPEQKKKKK IKFSFPLAPI ETSQDQPVPQ  240
TVRKCLHCEI TKTPQWRAGP MGPKTLCNAC GVRYKKGRLY PEYRPAASPT FVPSLHSNSH  300
KKVLEMRSND ASNYHTTLSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350222.11e-162PREDICTED: GATA transcription factor 8-like
RefseqXP_006350223.11e-162PREDICTED: GATA transcription factor 8-like
TrEMBLM1CLQ91e-160M1CLQ9_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000701341e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-39GATA family protein