PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00735g02002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 341aa    MW: 38417.6 Da    PI: 6.8324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00735g02002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008161183123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C+++F++   L  H  +H
  Peinf101Scf00735g02002.1 161 YECKTCNRTFPSFQALGGHRASH 183
                               99**********99999998887 PP
2zf-C2H212.70.0004240262123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg  F +   L  H+r+H
  Peinf101Scf00735g02002.1 240 HECSYCGAEFASGQALGGHMRRH 262
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-13160185IPR007087Zinc finger, C2H2
SuperFamilySSF576675.86E-9160183No hitNo description
PROSITE profilePS5015710.408161188IPR007087Zinc finger, C2H2
SMARTSM003550.052161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
SuperFamilySSF576675.86E-9235262No hitNo description
Gene3DG3DSA:3.30.160.607.2E-4238264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-12240264IPR007087Zinc finger, C2H2
SMARTSM003550.016240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221240267IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEALEEVVGV PNKDLFHIVK GKRTKRLRLQ SPIPFTVAAT HDSSNACDDH KNDTDNGEDV  60
PHNNNNNNSD NNASPSSAPS AEMFINTFTE DEEETARYLI LMSKCDDHLH PRNKSRDGLP  120
PDKFELFNDD LKLYQSKFNS KRYIETSTNL GNGTKAGIFV YECKTCNRTF PSFQALGGHR  180
ASHKKPKILT TELVNNKKLY FDFSDEDDQP SPSTTLCKTN KDVNRILPNS TNKYTSPRIH  240
ECSYCGAEFA SGQALGGHMR RHRGGVNLNS SLHLSNYVSP ATSIDQEFAN NTMKKVPRDG  300
LSLDLNLPVS DDNLDPKYPV FSLKQQDQEK TQRQQLVDCH Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004520.0AB000452.1 Petunia x hybrida mRNA for PEThy;ZPT2-6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587785.11e-141PREDICTED: putative uncharacterized protein DDB_G0287457
TrEMBLP937140.0P93714_PETHY; PEThy;ZPT2-6
STRINGXP_009587785.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-43C2H2 family protein