PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00734g09001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 210aa    MW: 23084.8 Da    PI: 6.6309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00734g09001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00125880123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C + F ++  L  H++ H
  Peinf101Scf00734g09001.1 58 FSCNFCRRKFYSSQALGGHQNAH 80
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-65485No hitNo description
PROSITE profilePS5015711.1985885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MKPPNFSFES EEGSEDPMPV TLDLTLGFNS SDAELKTNGE TSGEVVPDPP TAAGSRIFSC  60
NFCRRKFYSS QALGGHQNAH KRERTLAKRA MRMGMLSDRY ASLASLPLHG AAFRSLGVEA  120
HASAHQRVSY QERPIHAVRA GARFEQGYFG MPVFVEDDEV EMFWPGSFRQ VEGISGNMGF  180
HSGQSSNINF VAVAPQTRTE PSLPDLNLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-173HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600795.11e-134PREDICTED: zinc finger protein 4-like isoform X3
SwissprotQ392635e-50ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A1S3Y5V91e-132A0A1S3Y5V9_TOBAC; zinc finger protein 4-like
STRINGPGSC0003DMT4000758981e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-52zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]