PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00734g05021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARR-B
Protein Properties Length: 567aa    MW: 61662.5 Da    PI: 6.829
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00734g05021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.72e-26129182155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr++W+ eLH++Fv+av+qL G++ A+P +ilelm+v+gLt+++v+SHLQk+Rl
  Peinf101Scf00734g05021.1 129 KPRVVWSVELHQQFVSAVNQL-GIKDAVPTRILELMNVPGLTRDNVASHLQKFRL 182
                               79*******************.9*******************************8 PP
2Response_reg33.91.7e-1215653109
                               CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                               mp+mdG++ll+ i  e  +lp+i++++ g  + + + ++ Ga d+l Kp+  eel++
  Peinf101Scf00734g05021.1   1 MPDMDGFKLLELIGLEM-DLPVIMMSSDGRTNVVMRGVQHGACDYLIKPIRDEELRN 56 
                               9************6644.8************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011024.698162IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.8E-20193No hitNo description
CDDcd001564.38E-13161No hitNo description
SuperFamilySSF521726.83E-16169IPR011006CheY-like superfamily
PfamPF000722.1E-9157IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466891.4E-18126186IPR009057Homeodomain-like
PROSITE profilePS5129411.307126185IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-28127186IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-22129182IPR006447Myb domain, plants
PfamPF002495.0E-6131180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MPDMDGFKLL ELIGLEMDLP VIMMSSDGRT NVVMRGVQHG ACDYLIKPIR DEELRNIWQH  60
VVRKRSIKEH EYSGSLDDNN QHKRRSDDAE CASSVIEGAD GVKPQKKKRD AKEEDDTEIE  120
NDERITAKKP RVVWSVELHQ QFVSAVNQLG IKDAVPTRIL ELMNVPGLTR DNVASHLQKF  180
RLYLKRLDGV AQQQGGLPSI FCGPSEQNPK LGSLGRFDIQ AQAASGQLSP ETLTALHAQL  240
LGRSTSSVAL PAVVEQPHLL QASLQQVKCM PADQVMAYSQ PLMKWPPSIS NSKHLSQPII  300
SAEDVHSGYG SWLTKTRCMV PGSNLTGLAA PDSNMLVAMM QQRQWQKQQQ LEQQQKQSGP  360
SETNRSINVK PSCIVLPSQL PDNFQVGDSP ASSNQACSLS KSSVIDYSVL SSQSNNSSGV  420
VQVLDGEFKT ACGLNRHCSA GSLSPSVSAS SAYADNSFGL QHPNSSSVFG TSKQLPGLPN  480
HLGSPVSYSS RSSQVLYPGI GKGASIPSRF AVDESGSPMC NLNTSNIYPE DTTVKQELNM  540
NIMENAKAGA SIFQKFSPGD LTSVFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A9e-21129185157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4125410.0JF412541.1 Nicotiana tabacum RRB1 type-b response regulator mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312865.10.0two-component response regulator ORR21-like
TrEMBLG1APJ80.0G1APJ8_TOBAC; RRB1 type-b response regulator
STRINGXP_009599319.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-82response regulator 2