PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00728g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24440.4 Da PI: 5.8528 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.6e-18 | 22 | 72 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g Peinf101Scf00728g02003.1 22 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 72 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.5E-12 | 22 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-31 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-33 | 23 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-21 | 23 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.958 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 24 | 35 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.24E-31 | 24 | 82 | No hit | No description |
PRINTS | PR00367 | 1.3E-9 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MDKAQDLEAK KIKRNRDSSK HPVYRGVRMR NWGKWVSEIR EPRKKSRIWL GTFPNPEMAA 60 RAHDVAALSI KGNSAILNFP ELADLLPRPL TLSPRDIQAA ATKAAAMEKF DNINNNIVSS 120 VSPNNSATTT TSTSTCSSSV SSSNMSTSSS LSSLVSAIDL ATSEELTQII ELPRLGTNFD 180 EYKNDFVYSD QYSAAMEGWL YPDEDAGMIS SCFEPSSLWN Y |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 18 | 81 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019263162.1 | 1e-105 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 9e-62 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1J6JEB9 | 1e-103 | A0A1J6JEB9_NICAT; Dehydration-responsive element-binding protein 3 | ||||
STRING | XP_009767580.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-56 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|