PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00719g04004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 351aa MW: 39577.8 Da PI: 9.4876 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 374.2 | 2.3e-114 | 29 | 351 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 mdd+g+++ r+k+ + + ++ +s+ +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a++ern+a++erd Peinf101Scf00719g04004.1 29 MDDSGHHDngRHKPpQSQwlmQHqPSM-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAITERNNAIMERD 108 999999988999983322333222444.....4**************************************************** PP GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161 n++++l+++e s+ +g q+++g+++++++qq +++ +++++++++ r+++++e++p++ aa e +k+++++rak+pk+ Peinf101Scf00719g04004.1 109 NAIASLQYRESSM-----SGGQIVHGVEHMHHHQQhVHHqKHMGEPTYNHRDMHMNESMPVSPAA---LEPTKPRRNKRAKEPKA 185 ********99984.....57789**********996444689******************88755...45555555556666666 PP GAGA_bind 162 kkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtG 217 + +kk+ k + kkvk+e++d + sk ++k++dl+ln+v++D++t+PvPvCsCtG Peinf101Scf00719g04004.1 186 VTDSKKTPKAS---KKVKRETEDLNqttfgksqewngaqemgaasddlnrqlvvSKPDWKDQDLGLNQVAFDDTTMPVPVCSCTG 267 65554444333...3333333331123466778899************************************************* PP GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 a r CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG dlsnpvDLk+hWAkHGtn+++ti+ Peinf101Scf00719g04004.1 268 AVRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGNDLSNPVDLKNHWAKHGTNRYITIK 351 ***********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.4E-156 | 29 | 351 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.7E-103 | 29 | 351 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MLVKQRALSN IVMLLAETDF DGNYHIYHMD DSGHHDNGRH KPPQSQWLMQ HQPSMKQIMA 60 IMAERDAAIQ ERNLALSEKK AALAERDMAI LQRDSAITER NNAIMERDNA IASLQYRESS 120 MSGGQIVHGV EHMHHHQQHV HHQKHMGEPT YNHRDMHMNE SMPVSPAALE PTKPRRNKRA 180 KEPKAVTDSK KTPKASKKVK RETEDLNQTT FGKSQEWNGA QEMGAASDDL NRQLVVSKPD 240 WKDQDLGLNQ VAFDDTTMPV PVCSCTGAVR PCYKWGNGGW QSSCCTTNLS MYPLPAVPNK 300 RHARIGGRKM SGSAFTKLLS RLAAEGNDLS NPVDLKNHWA KHGTNRYITI K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ808724 | 0.0 | KJ808724.1 Nicotiana tabacum GAGA-binding transcriptional activator mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313105.1 | 0.0 | protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_009798749.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_009798750.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_009798751.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016451527.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016451528.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016451530.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016451531.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509512.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509513.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509514.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509515.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_016509516.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Refseq | XP_018628854.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_018628855.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
Refseq | XP_018628856.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
Refseq | XP_018628857.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
Refseq | XP_019244940.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Refseq | XP_019244941.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
Swissprot | Q8L999 | 1e-137 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A076L2D6 | 0.0 | A0A076L2D6_TOBAC; GAGA-binding transcriptional activator | ||||
TrEMBL | A0A1J6J273 | 0.0 | A0A1J6J273_NICAT; Protein basic pentacysteine6 | ||||
TrEMBL | A0A1U7Y9Y3 | 0.0 | A0A1U7Y9Y3_NICSY; protein BASIC PENTACYSTEINE6-like | ||||
STRING | XP_009798749.1 | 0.0 | (Nicotiana sylvestris) | ||||
STRING | XP_009610156.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5353 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-122 | basic pentacysteine 6 |