PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00713g05035.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 486aa    MW: 54674.7 Da    PI: 8.0098
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00713g05035.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-16129216196
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f k l++s+v++  ++ lp +f+++h   +++++ ++le e+g ++e+k+i +k++    l++GW++++ a +L egD++vF+l+
  Peinf101Scf00713g05035.1 129 FMKLLVRSHVGSCFWMGLPGPFCKTHL--PRKDTAVILEGENGDEFEIKYIAEKTG----LSAGWRKYAAAYKLLEGDVLVFQLI 207
                               899***********************5..456779***************777777....************************9 PP

                               SSSEE..EEEE CS
                        B3  86 grsefelvvkv 96 
                               g ++  l+  v
  Peinf101Scf00713g05035.1 208 GPTR--LKAYV 216
                               9544..45555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-20122220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-17122220IPR015300DNA-binding pseudobarrel domain
CDDcd100177.65E-22127218No hitNo description
SMARTSM010194.9E-16129220IPR003340B3 DNA binding domain
PfamPF023624.7E-14129217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012129220IPR003340B3 DNA binding domain
PfamPF052664.4E-8362462IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MKIKVVHRSE PPNQEHIFNQ EMLKKEVLDN EEQENQQLGI TQPEAESGIP NSTNLNLGKR  60
KRKPKEIVDQ FSEIPFRKKR AVADAGGKST SKQERATADG SGSAVQMKLP IIIRAEEFQS  120
SLGHEYPSFM KLLVRSHVGS CFWMGLPGPF CKTHLPRKDT AVILEGENGD EFEIKYIAEK  180
TGLSAGWRKY AAAYKLLEGD VLVFQLIGPT RLKAYVIRAN DLKEVDGALS LLNLEALSKQ  240
SDAEGTNAHN IKKRQKKSLP LTVVQRRRKT VLTKQLVPLE AQSGNDSDEV ASEILEGSRS  300
SGLAVLFREV KSLEEFHILV NGVCIDSELP EHIRRKYYEL CCSKNAFLHD RLLQGLHCKL  360
VAGMIFEVVN IADAIKACKL TTPRKEFDIW EKSLKSFELL GMNVGFLRTR LRWLLSLAFD  420
SEGASDTKRY WEAKNELSRA EDEIKDLEAK LVELKQTSEK CGADVEALKS KAESYELMFQ  480
GEVNAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251268KKRQKKSLPLTVVQRRRK
2264269QRRRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339907.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLM1BAE90.0M1BAE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000407860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-35B3 family protein