PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00692g12009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 267aa    MW: 31337.6 Da    PI: 9.3616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00692g12009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.25e-202370148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd+ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
  Peinf101Scf00692g12009.1 23 KGPWTAEEDKLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                              79********************************************97 PP
2Myb_DNA-binding51.81.8e-1676120147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Peinf101Scf00692g12009.1  76 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                               7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6341874IPR017930Myb domain
SuperFamilySSF466894.4E-3120117IPR009057Homeodomain-like
SMARTSM007172.7E-172272IPR001005SANT/Myb domain
PfamPF002491.9E-182370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-242477IPR009057Homeodomain-like
CDDcd001671.83E-122570No hitNo description
PROSITE profilePS5129419.61675125IPR017930Myb domain
SMARTSM007176.4E-1575123IPR001005SANT/Myb domain
PfamPF002497.7E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2478124IPR009057Homeodomain-like
CDDcd001672.48E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLCQLMSSEQ MGSWGVIEEG WRKGPWTAEE DKLLIEYVKL HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PHEERIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKTKNSCC NSEKSRARLW KRQQFQQLQQ QQQQQQQQIN DHIDIKKMMS LFDQNENKGQ  180
LMPQGKQEMA MLYPNTTNQQ EQVGLFYSML NGCASVSLPE PSSNEDTMWD GLWNLDDFYG  240
HFINTSTTYN KATPCLQTMA TIPPAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-282312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589042.11e-143PREDICTED: myb-related protein 305
TrEMBLA0A1S4BX881e-141A0A1S4BX88_TOBAC; myb-related protein 305-like
TrEMBLA0A1U7XSM81e-141A0A1U7XSM8_NICSY; transcription factor MYB21-like
STRINGXP_009589042.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-84myb domain protein 305