PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00688g01015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | Nin-like | ||||||||
Protein Properties | Length: 926aa MW: 103393 Da PI: 6.5587 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.3 | 1.5e-28 | 611 | 662 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+++ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Peinf101Scf00688g01015.1 611 AEKNITVQILQQHFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 662 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.574 | 601 | 682 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.6E-25 | 614 | 662 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.42E-21 | 824 | 911 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.4E-20 | 828 | 910 | No hit | No description |
SMART | SM00666 | 2.5E-22 | 831 | 915 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 22.673 | 831 | 914 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.79E-38 | 833 | 910 | No hit | No description |
Pfam | PF00564 | 6.2E-16 | 833 | 910 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 926 aa Download sequence Send to blast |
MDERLFAPNT FLTTSPFDSF MDLDYMDELL LDDCLLETTD NREFMHHRPS ISNMPLDSSF 60 VWPTLLDTIG VEFSGIPSKS CQQERQRSSF SKNSSISEFQ ELNSAKVQSF GENVSNNMCS 120 SGQVENCLFD AAELSGRRWI GPKASSSVMD RLIQALGYIK NCSKDKDILI QIWVPINSDG 180 TRVLSTNDQP FSLDLNCPRL AHYRQVSVNY QFPANDNSKE IVGLPGRVFL GKVPEWTPDV 240 QFFRREEYSR FEHAQQYDVR GTLAVPVFEK GSRKCLSVIE VVTTTQKIKY SPELENVCKA 300 LEAVDLRSSE VSSTLTAKAC NLTYQAVLSE ILEVMKSACK THGLPLAQTW VPCIQHGKGG 360 CCHSNENLGH CISTEDPAYY VADPQVQGFH EACSEHHLLR GQGIVGNAFM TNQPCFSADL 420 TSYSKTEYPL SHYARMFGLH AAVAIRMRST LTGSSDFILE FFLPPNCRNP EDHRRMLTSL 480 SIIIQHVCQT LRVVTDEELQ EETFSLGEVT TPAAGRFTKE VKKHERNGSI ASSQERTFWT 540 SNHADVQESS SVLSAFQHEK VEVMSKELIE SRHQTSAGSR TGFAFSRNNR SSVDGVSHNL 600 HKTGDRRRMK AEKNITVQIL QQHFAGSLKD AAKSIGVCPT TLKRICRQHG IQRWPSRKIK 660 KVGLSLEKIR RVINSVQGAA GTLQVESFYS NFPELASPNI SRSPFADSKP DYHLEALNSQ 720 SESGIMSPSA VASKSASSSC SQGSSSSQCC STGTQPHPYP SNAEGHVVPV ANEESVNYAV 780 NRVKSDAELD LSGEALNPLP RSQSHVFLAE NPKSTIFSPM KKSLFGSQED APRIKVIHGE 840 EKIRFRMQKD WGYKELMSEI ARRFGVDDPN VYHLKYLDDD SEWVLLTCEA DLEECIDVCW 900 SSQNQTIRLL FLHDSQSNLG SSFGSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600534.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Refseq | XP_009600535.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Refseq | XP_016442216.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Refseq | XP_016442217.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Refseq | XP_016442218.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
TrEMBL | A0A1S3XQJ0 | 0.0 | A0A1S3XQJ0_TOBAC; protein NLP5-like | ||||
STRING | XP_009600534.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |