PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00672g11003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 26118.8 Da PI: 4.4186 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++++ G g+W++ ++ gRt++++k+ w+++l Peinf101Scf00672g11003.1 14 KGPWTPEEDQILVSYIEKNGHGNWRALPKLAArlPGRTDNEIKNVWHTHL 63 79***********************9988888888************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 5 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.38E-16 | 8 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.008 | 9 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-12 | 13 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 14 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-12 | 16 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRAPCCEKM GLKKGPWTPE EDQILVSYIE KNGHGNWRAL PKLAARLPGR TDNEIKNVWH 60 THLKKRLKNY QPPQNSKRHN HDSKAPSTSK MLDNSENFST IQEDINEPMN GPNSPQRSSS 120 ETSTVTADSL TGTDVTNDDQ TFIKHEEMDS YENFPEIDES FWTEDLSMGD NLDLDMEVAG 180 EKSQVQFPYS HDMKEQSVDM VGAKLEDDMD FWYNVFIKAE DLLDLPEF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Z13997 | 0.0 | Z13997.1 P.Hybrida myb.Ph2 gene encoding protein 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261805.1 | 1e-116 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | Q02993 | 1e-150 | Q02993_PETHY; Protein 2 | ||||
STRING | XP_009762172.1 | 1e-115 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-45 | myb domain protein 15 |