PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00660g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 510aa MW: 57207.6 Da PI: 6.3983 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.5e-07 | 260 | 281 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Peinf101Scf00660g02003.1 260 FCTICGKGFKRDANLRMHMRGH 281 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.29E-5 | 257 | 284 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 259 | 286 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 259 | 281 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.1E-6 | 260 | 310 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 261 | 281 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 62 | 308 | 341 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 346 | 368 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MDQDDSLSED PWTKSSSSGN ELLVPSDNHS FSNFNLHQHK WGSSSYLDQQ TRIEQQFSGS 60 TQPKHTSQMD QQGNQRNENH DSTRMHDWDP TALLNNLSFL EQKIHQLQEL VQMIVGRRGQ 120 AGLQGNDLLV QQQQLITADL TSIIVQLIST AGSLLPTMKH TLPFASPATT QLGQVGGVTV 180 PSAIATNTSG LPCNDNVTKV EDQSNHIDKL RDCGIEQNYA VDEHESKDED EAEEEENLPP 240 GSYEILQLEK EEILAPHTHF CTICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPHKEPSS 300 EPTLIKRYSC PYVGCKRNKE HKKFQPLKTI LCVKNHYKRT HCEKSYTCSR CNTKKFSVIA 360 DLKTHEKHCG KDKWLCSCGT TFSRKDKLFG HITLFQGHTP AIPLDETKGS AGTSDRGQTS 420 EVTVKARLEN YKVNTSHGDV FQNPRDLKDS ADDPGSFFPP LNFDTSNLNG FQEFRPPFDE 480 SDSSFSFLLS GSCEYPPQKA AKYMSSTELE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620662.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Refseq | XP_016487627.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A1S4BFG4 | 0.0 | A0A1S4BFG4_TOBAC; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | XP_009620662.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4754 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-166 | C2H2 family protein |