PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00657g08019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 371aa    MW: 41650 Da    PI: 8.9574
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00657g08019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.6e-175811799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               +p kf+++  + ++  + +tle +sg +W+v l     +++ +l+ GWkeFv+a+ Lke D ++Fk++g+s+f   v +f++
  Peinf101Scf00657g08019.1  5 AIPQKFTNN--LREKLAVSVTLEGPSGATWNVGL--IADGDALFLKHGWKEFVDAHVLKEDDLLIFKYNGDSRF--DVLMFDR 81
                              599***944..45568999***************..888889****************************9999..8888876 PP
2B337.83.3e-12270357496
                               E-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                        B3   4 vltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                               v+ + +v k   +++p   a+ h    +       +++l+  + ++W+ +l    ++  + lt+GW++Fv +n L+e D++vF l
  Peinf101Scf00657g08019.1 270 VMRSTHVYKGFYMSIPSGWARIHlpfrN------GDVMLRV-KENTWQARL--YERRFNCGLTGGWRNFVLDNFLEEFDVCVFNL 345
                               566778999999********88854321......2566555.88*******..77777788***********************9 PP

                               -SSSEE..EEEE CS
                        B3  85 dgrsefelvvkv 96 
                               +  +++++ + v
  Peinf101Scf00657g08019.1 346 TTGEDGTPILDV 357
                               977888887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.594182IPR003340B3 DNA binding domain
SMARTSM010192.7E-8182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-18581IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-14581IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-18581IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-16680No hitNo description
Gene3DG3DSA:2.40.330.101.4E-16264361IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-17266361No hitNo description
PROSITE profilePS5086310.997267363IPR003340B3 DNA binding domain
SMARTSM010191.7E-4267363IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-14268361IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-10270356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MKLQAIPQKF TNNLREKLAV SVTLEGPSGA TWNVGLIADG DALFLKHGWK EFVDAHVLKE  60
DDLLIFKYNG DSRFDVLMFD RQSLCEKEAS YFVKACAHTD AESGGKTKRS IPESYDKAYE  120
PSHEVFEGTP RIKPLENVDT ANESSHEVFE GTARKKPRKN GACTSTSATR AKGKLQTRKN  180
IDAAVESSHE VFEGTTRKNH GENGASTPTC GITRAKGKLQ TREIKSTSSK TRSGTQLQLK  240
SNRRAVNEEE KRKALDMSTV AVTENSLRVV MRSTHVYKGF YMSIPSGWAR IHLPFRNGDV  300
MLRVKENTWQ ARLYERRFNC GLTGGWRNFV LDNFLEEFDV CVFNLTTGED GTPILDVSIF  360
RVVEEVIPPS Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1524136622146B3 domain-containing transcription factor VRN1
4i1k_B4e-1524136622146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-34B3 family protein