PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00657g08017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 351aa MW: 39951.5 Da PI: 9.4395 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 6 | 82 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p kfa + +k ++l+ +sg +W+v l + +++ +l+ GWkeFv+a+ L+e D ++Fk++g+s+f v +f+k Peinf101Scf00657g08017.1 6 AIPQKFAINLREK--LAGSVSLKGPSGATWNVGL--TANGDVLFLKHGWKEFVEAHILEEDDLLIFKYNGDSQF--DVLMFDK 82 69****9766555..4457***************..**********************************9999..8888876 PP | |||||||
2 | B3 | 47.2 | 4.1e-15 | 221 | 309 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f v+ ps+v k+ +++p + a+ h + +s +++l+ + ++W+ ++ +r +s++ lt GWk+Fv +n L+e D++vF l+ Peinf101Scf00657g08017.1 221 FRVVMRPSHVYKRFYMSIPSEWARIHL-P-SRSLDVMLRV-KENTWKTRFYHRDYSRG--LTCGWKNFVLENFLEEFDVCVFNLT 300 678999*****************7774.4.4667888766.889******77999988..9**********************99 PP SSSEE..EE CS B3 86 grsefelvv 94 +++++ + + Peinf101Scf00657g08017.1 301 SSEDEDPIL 309 776665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 15.199 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-8 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-17 | 6 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.6E-14 | 6 | 82 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-18 | 6 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.71E-14 | 7 | 81 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 217 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-16 | 220 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.76E-18 | 220 | 315 | No hit | No description |
SMART | SM01019 | 3.4E-9 | 221 | 317 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-13 | 221 | 309 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 221 | 317 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MMKLQAIPQK FAINLREKLA GSVSLKGPSG ATWNVGLTAN GDVLFLKHGW KEFVEAHILE 60 EDDLLIFKYN GDSQFDVLMF DKQSFCEKEA SYFVKKCAHT DAASGGKTKR SIPESTANES 120 SHEVFDGTAR KKPQKNMDSA SESSHEVFEG TSRKKPRKIG ACTSTGTRAN GKLRTREIKG 180 TSSRTMGGYE LQLISNRHAV NEEEKKKAFD MATEAVTENS FRVVMRPSHV YKRFYMSIPS 240 EWARIHLPSR SLDVMLRVKE NTWKTRFYHR DYSRGLTCGW KNFVLENFLE EFDVCVFNLT 300 SSEDEDPILD VSIFRVVEEV IPPSHVTPAS SKQGRKPNKF MREKKLLELN L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-15 | 195 | 320 | 22 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-15 | 195 | 320 | 22 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061149.1 | 1e-117 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A2R6RN22 | 1e-106 | A0A2R6RN22_ACTCH; B3 domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13043 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-48 | B3 family protein |