PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00657g08017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 351aa    MW: 39951.5 Da    PI: 9.4395
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00657g08017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-166821799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               +p kfa +  +k      ++l+ +sg +W+v l  + +++  +l+ GWkeFv+a+ L+e D ++Fk++g+s+f   v +f+k
  Peinf101Scf00657g08017.1  6 AIPQKFAINLREK--LAGSVSLKGPSGATWNVGL--TANGDVLFLKHGWKEFVEAHILEEDDLLIFKYNGDSQF--DVLMFDK 82
                              69****9766555..4457***************..**********************************9999..8888876 PP

2B347.24.1e-15221309194
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f  v+ ps+v k+  +++p + a+ h  +  +s +++l+  + ++W+ ++ +r +s++  lt GWk+Fv +n L+e D++vF l+
  Peinf101Scf00657g08017.1 221 FRVVMRPSHVYKRFYMSIPSEWARIHL-P-SRSLDVMLRV-KENTWKTRFYHRDYSRG--LTCGWKNFVLENFLEEFDVCVFNLT 300
                               678999*****************7774.4.4667888766.889******77999988..9**********************99 PP

                               SSSEE..EE CS
                        B3  86 grsefelvv 94 
                               +++++ + +
  Peinf101Scf00657g08017.1 301 SSEDEDPIL 309
                               776665554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.199183IPR003340B3 DNA binding domain
SMARTSM010193.9E-8183IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-17682IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-14682IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18682IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-14781No hitNo description
Gene3DG3DSA:2.40.330.101.1E-19217315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-16220315IPR015300DNA-binding pseudobarrel domain
CDDcd100179.76E-18220315No hitNo description
SMARTSM010193.4E-9221317IPR003340B3 DNA binding domain
PfamPF023624.3E-13221309IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942221317IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMKLQAIPQK FAINLREKLA GSVSLKGPSG ATWNVGLTAN GDVLFLKHGW KEFVEAHILE  60
EDDLLIFKYN GDSQFDVLMF DKQSFCEKEA SYFVKKCAHT DAASGGKTKR SIPESTANES  120
SHEVFDGTAR KKPQKNMDSA SESSHEVFEG TSRKKPRKIG ACTSTGTRAN GKLRTREIKG  180
TSSRTMGGYE LQLISNRHAV NEEEKKKAFD MATEAVTENS FRVVMRPSHV YKRFYMSIPS  240
EWARIHLPSR SLDVMLRVKE NTWKTRFYHR DYSRGLTCGW KNFVLENFLE EFDVCVFNLT  300
SSEDEDPILD VSIFRVVEEV IPPSHVTPAS SKQGRKPNKF MREKKLLELN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1519532022146B3 domain-containing transcription factor VRN1
4i1k_B6e-1519532022146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061149.11e-117B3 domain-containing protein REM16
TrEMBLA0A2R6RN221e-106A0A2R6RN22_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-48B3 family protein