PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00657g08004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 325aa MW: 36440.7 Da PI: 10.1633 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.9e-17 | 5 | 81 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p kf+++ +k ++l+ +sg +W+v l + +++ +l+ GWkeFv+a+ L+e Df++Fk++g+s+f v++f++ Peinf101Scf00657g08004.1 5 AIPQKFVNNLREK--LAGSVSLKGPSGATWNVGL--TLDGDALLLKHGWKEFVDAHILEEDDFLIFKYNGDSRF--DVSMFDR 81 59*****655544..4457***************..888889****************************9999..9999887 PP | |||||||
2 | B3 | 42.6 | 1.1e-13 | 203 | 288 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 v+ ps+v k +++p + a +++++ +s +++l+ + ++W+ +li ++ ++ lt+GWk+Fv +n L+e D++vF l+ + Peinf101Scf00657g08004.1 203 VMRPSHVYKAFFMSIPSEWA-RINLPR-RSGDVMLRV-KENTWQARLIDKG--YTCGLTGGWKNFVIENFLEEFDVCVFNLTTGE 282 6889****************.565664.556888776.899******5444..5566***********************99667 PP EE..EE CS B3 89 efelvv 94 ++ + + Peinf101Scf00657g08004.1 283 DGAPIL 288 766654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.4E-7 | 1 | 82 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.636 | 1 | 82 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-13 | 5 | 81 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-17 | 5 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-18 | 5 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-14 | 6 | 80 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-17 | 198 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-15 | 200 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.7E-9 | 200 | 296 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.307 | 200 | 296 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-12 | 203 | 288 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.66E-16 | 203 | 294 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MKLQAIPQKF VNNLREKLAG SVSLKGPSGA TWNVGLTLDG DALLLKHGWK EFVDAHILEE 60 DDFLIFKYNG DSRFDVSMFD RQSFCEKEAS YFVKKCAHTD AVSGGKTKRS IPESYVSANE 120 SSHEVFESTP RKKPRKNGAC TPTSRTRANG KLRTREIKSS SSTTMRGYPL LLKSNRRAVN 180 EEEKKKAFDM ATAAVTENSL RIVMRPSHVY KAFFMSIPSE WARINLPRRS GDVMLRVKEN 240 TWQARLIDKG YTCGLTGGWK NFVIENFLEE FDVCVFNLTT GEDGAPILDV SIFRVVEEVI 300 PPSLVTPASS SKGKKPNKLT RKKAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-16 | 174 | 299 | 22 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-16 | 174 | 299 | 22 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061149.1 | 1e-115 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A2R6RN22 | 1e-111 | A0A2R6RN22_ACTCH; B3 domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13043 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-46 | B3 family protein |