PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00657g08004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 325aa    MW: 36440.7 Da    PI: 10.1633
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00657g08004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.9e-175811799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               +p kf+++  +k      ++l+ +sg +W+v l  +  +++ +l+ GWkeFv+a+ L+e Df++Fk++g+s+f   v++f++
  Peinf101Scf00657g08004.1  5 AIPQKFVNNLREK--LAGSVSLKGPSGATWNVGL--TLDGDALLLKHGWKEFVDAHILEEDDFLIFKYNGDSRF--DVSMFDR 81
                              59*****655544..4457***************..888889****************************9999..9999887 PP

2B342.61.1e-13203288494
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               v+ ps+v k   +++p + a +++++  +s +++l+  + ++W+ +li ++   ++ lt+GWk+Fv +n L+e D++vF l+  +
  Peinf101Scf00657g08004.1 203 VMRPSHVYKAFFMSIPSEWA-RINLPR-RSGDVMLRV-KENTWQARLIDKG--YTCGLTGGWKNFVIENFLEEFDVCVFNLTTGE 282
                               6889****************.565664.556888776.899******5444..5566***********************99667 PP

                               EE..EE CS
                        B3  89 efelvv 94 
                               ++ + +
  Peinf101Scf00657g08004.1 283 DGAPIL 288
                               766654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.4E-7182IPR003340B3 DNA binding domain
PROSITE profilePS5086315.636182IPR003340B3 DNA binding domain
PfamPF023621.9E-13581IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-17581IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-18581IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-14680No hitNo description
Gene3DG3DSA:2.40.330.101.3E-17198294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15200279IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-9200296IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307200296IPR003340B3 DNA binding domain
PfamPF023623.0E-12203288IPR003340B3 DNA binding domain
CDDcd100174.66E-16203294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKLQAIPQKF VNNLREKLAG SVSLKGPSGA TWNVGLTLDG DALLLKHGWK EFVDAHILEE  60
DDFLIFKYNG DSRFDVSMFD RQSFCEKEAS YFVKKCAHTD AVSGGKTKRS IPESYVSANE  120
SSHEVFESTP RKKPRKNGAC TPTSRTRANG KLRTREIKSS SSTTMRGYPL LLKSNRRAVN  180
EEEKKKAFDM ATAAVTENSL RIVMRPSHVY KAFFMSIPSE WARINLPRRS GDVMLRVKEN  240
TWQARLIDKG YTCGLTGGWK NFVIENFLEE FDVCVFNLTT GEDGAPILDV SIFRVVEEVI  300
PPSLVTPASS SKGKKPNKLT RKKAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1617429922146B3 domain-containing transcription factor VRN1
4i1k_B3e-1617429922146B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061149.11e-115B3 domain-containing protein REM16
TrEMBLA0A2R6RN221e-111A0A2R6RN22_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-46B3 family protein