PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00657g04007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 249aa    MW: 27450.5 Da    PI: 4.3599
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00657g04007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-111443130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                              +g+WT+eEd++lvd+++++G g+W++ ++ 
  Peinf101Scf00657g04007.1 14 KGPWTPEEDKKLVDYIEKHGHGSWRALPKL 43
                              79***********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-13543IPR009057Homeodomain-like
PROSITE profilePS512949.316959IPR017930Myb domain
SuperFamilySSF466894.35E-91143IPR009057Homeodomain-like
SMARTSM007172.6E-41360IPR001005SANT/Myb domain
PfamPF002492.8E-91443IPR001005SANT/Myb domain
CDDcd001673.21E-71658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDKKLVDYIE KHGHGSWRAL PKLAEAAQVA KLQYLQWLFQ  60
SSSSNSNNYP IATSLNTTQY SNLGDFGPFN LSNSIKEGTP SINLSLLENQ TLFSNENSGS  120
QLLHNPDTSL PLPDTQEVPF NFQAHLNNNN NNNNNNNNNN NNNNNNNNNN NTSGDNGQDF  180
NFEICSPSSP LNNIIHSPPS SSRLPPLTEI SISNNQGDAS STNSSNAAEG TSSYWPELFF  240
EDNFMHEIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9147555e-41CU914755.2 S.lycopersicum DNA sequence from clone LE_HBa-178P3 on chromosome 4, complete sequence.
GenBankHG9754435e-41HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755165e-41HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594598.14e-69PREDICTED: transcription factor MYB39-like
RefseqXP_016464328.14e-69PREDICTED: transcription factor MYB39-like
TrEMBLA0A1S3ZJ291e-67A0A1S3ZJ29_TOBAC; transcription factor MYB39-like
STRINGXP_009594598.12e-68(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-28myb domain protein 93