PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00650g09007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 473aa MW: 53527.7 Da PI: 6.3058 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 417.1 | 1.6e-127 | 46 | 468 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv+lL+ c+++v++g+ e a+ r+ +la+pdgd+mqR+aayfteALa r+++ +++l +al++++ + +e++ ++klf+ Peinf101Scf00650g09007.1 46 LVHLLVICVNHVATGNIESANIGFDRIAHLAAPDGDSMQRIAAYFTEALADRMLKGWPGLHRALNSTKLA--CLAEQILVQKLFF 128 689*************************************************************999998..6************ PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e++P+l+++++++N+aI+ea+ege+ vHiiD++ +++QW++Llq++++Rpegpp+lRiTg+++ +k+ le+++++L++ Ae Peinf101Scf00650g09007.1 129 ELCPFLRLAYVITNEAIMEAMEGEKVVHIIDLNSFEPAQWINLLQSMSARPEGPPHLRITGIHE----HKHVLEQMAHQLNEEAE 209 ****************************************************************....9**************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214 +l++pf+fn+ ++++le+le+ +L+vk+gEalaV++vlqlh ll Peinf101Scf00650g09007.1 210 KLDIPFQFNP-IVSKLENLEIGSLNVKTGEALAVSSVLQLHCLLafddemlqkntpvvskstnsvhlqrmlqvsprtlgdflekd 293 **********.7999********************************************************************** PP GRAS 215 ...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +s+ ++ + ++L+ +++lsPk++v++eqe++hn+ s++er +eal++y+alfd+le+ pr+s er+k Peinf101Scf00650g09007.1 294 vpnsygaspdsslasPQSLVTAPKMMNFLNGLWNLSPKIMVMTEQESNHNGLSLMERTMEALNFYAALFDCLESREPRTSIERQK 378 *********999976333334446999********************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 +E++l g+ei+n+++ceg er+ rhe+lekW rle aGF+ v+l+ +++ q +llr ++ dg+++++++g+++++W+d+pL+s Peinf101Scf00650g09007.1 379 IEKMLYGEEIKNILSCEGLERKRRHEKLEKWIPRLEFAGFGRVQLNFHIMLQGMRLLRSHNYDGFKIKDQDGCFLICWQDQPLFS 463 ************************************************************************************* PP GRAS 370 vSaWr 374 vSaWr Peinf101Scf00650g09007.1 464 VSAWR 468 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.29 | 20 | 448 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-125 | 46 | 468 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MGQEEGSSSV SSSPLQFFSM MSLSPGIGSP YPWLGEMRSE QRGLCLVHLL VICVNHVATG 60 NIESANIGFD RIAHLAAPDG DSMQRIAAYF TEALADRMLK GWPGLHRALN STKLACLAEQ 120 ILVQKLFFEL CPFLRLAYVI TNEAIMEAME GEKVVHIIDL NSFEPAQWIN LLQSMSARPE 180 GPPHLRITGI HEHKHVLEQM AHQLNEEAEK LDIPFQFNPI VSKLENLEIG SLNVKTGEAL 240 AVSSVLQLHC LLAFDDEMLQ KNTPVVSKST NSVHLQRMLQ VSPRTLGDFL EKDVPNSYGA 300 SPDSSLASPQ SLVTAPKMMN FLNGLWNLSP KIMVMTEQES NHNGLSLMER TMEALNFYAA 360 LFDCLESREP RTSIERQKIE KMLYGEEIKN ILSCEGLERK RRHEKLEKWI PRLEFAGFGR 420 VQLNFHIMLQ GMRLLRSHNY DGFKIKDQDG CFLICWQDQP LFSVSAWRIQ RYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-36 | 46 | 468 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185670.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_019185679.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Refseq | XP_019185686.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A438GU36 | 0.0 | A0A438GU36_VITVI; Scarecrow-like protein 3 | ||||
TrEMBL | F6GX84 | 0.0 | F6GX84_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0019g01220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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