PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00650g07003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29596.2 Da PI: 4.1292 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.1 | 7.4e-21 | 15 | 57 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +ien nr vtfskRr+g++KKA+EL+++C++e+a++ f+++ Peinf101Scf00650g07003.1 15 KIENWWNRRVTFSKRREGLFKKASELCIMCGIEIAIVTFAPNS 57 69*************************************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.306 | 6 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-22 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-25 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-14 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-20 | 15 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-14 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-14 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MPRVSRGRKK VEITKIENWW NRRVTFSKRR EGLFKKASEL CIMCGIEIAI VTFAPNSMKV 60 YSFGHPSVYE MVDRYLARHP PGDDEHEEGE AEEEKVDGDD DDDDGDDEDD EEDDDYDDDA 120 VYDIDDDDDD DSNGNGVNPE FVEAYRNVSI TRIANELMAK EDELAREIKR GKELETVRKE 180 SGSDPQNWWE APIAKLNYDQ LQEVMEAMKT AQEKVEREAE RLKMEKENIK FPYSNFGSAL 240 APRQNFDANE PSGSGSTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25016 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-26 | AGAMOUS-like 62 |