PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00645g09008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 670aa MW: 72081.1 Da PI: 5.0304 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 301.4 | 2.1e-92 | 349 | 669 | 41 | 374 |
GRAS 41 laayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQW 125 +a+y +eAL+ l+ ++++l ++++s+ s + ++ a+k fse+sP+ +f+++t+Nqa+le ++g er+Hi+Dfdi++G+QW Peinf101Scf00645g09008.1 349 AAFYCKEALQLLLHANTNNLNPSMASSPFS---LIFKIGAYKSFSEISPVAQFANFTCNQALLEVLDGFERIHIVDFDIGYGGQW 430 799************999999888888888...**************************************************** PP GRAS 126 paLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL..rvkpgEalaVnlvl 208 ++L+q+La R++g+p+l+iT+++sp+++++ el t+e+L +fA+e+++ fef++l ++l++ ++L v+++Ea+aVnl Peinf101Scf00645g09008.1 431 ASLMQELALRSGGAPTLKITALASPSTHDQLELGLTRENLIQFASEINMAFEFEILSIDSLNST-SWSLppLVSENEAIAVNLPA 514 *******************************************************977766665.4555334788********** PP GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 + + + ++sl+ vL++vk+lsP++vv v++ +d+++ +F +++++al+ ys l++sl+a + ++ +k+Er+ll++ Peinf101Scf00645g09008.1 515 SSLSSY--QLSLPL----VLRFVKQLSPRIVVSVDRGCDRTDLPFPNHVIQALQSYSNLLESLDAV-NVNFDALQKIERFLLQPG 592 777776..555555....*********************************************665.3466999*********** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+ +v+ + ++ e+ ++Wr+ + ++G++p+pls+++++qa++++++++++g++ve+++ slvl+W++++Lvs+SaWr Peinf101Scf00645g09008.1 593 IERIVMGRFRS----PEKTQHWRSLFLSSGLSPLPLSNFTESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELVSASAWR 669 *****998877....9****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.174 | 279 | 649 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.4E-90 | 349 | 669 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MKGMPLPFEF EGKGVLDLDI LFNKNSILNS WNNKNSHNSS TSKESCYFVN SPSAVLDTIR 60 SPIRPITSSS TLSSSLGGGG GGGGGTASTD TAGGVAAVSK NPSSKWQQQQ QDNTTATSSN 120 VGAESELPPP SLEMGGGGGT ATAAAAAGTE EWEGGISEMA SPCQEQSILR WIMGDVDDPS 180 MANLNKVLQV SGPVDYEFNG GFGVVDQGFG VDPANQIGSF MPSVSVSSSS FPPPSARMNS 240 DKIGLGSNTA TNLSQNPIFP SLSNNLGPGG FGQAQQQPFE NSDLKPQGFN SQFLINQHQT 300 QIPQNPSFLL PLPFAQQEQN LVLPPQAKRH NPGTIGGLEQ GSQISKGMAA FYCKEALQLL 360 LHANTNNLNP SMASSPFSLI FKIGAYKSFS EISPVAQFAN FTCNQALLEV LDGFERIHIV 420 DFDIGYGGQW ASLMQELALR SGGAPTLKIT ALASPSTHDQ LELGLTRENL IQFASEINMA 480 FEFEILSIDS LNSTSWSLPP LVSENEAIAV NLPASSLSSY QLSLPLVLRF VKQLSPRIVV 540 SVDRGCDRTD LPFPNHVIQA LQSYSNLLES LDAVNVNFDA LQKIERFLLQ PGIERIVMGR 600 FRSPEKTQHW RSLFLSSGLS PLPLSNFTES QAECVVKRTP VRGFHVEKRQ SSLVLCWQRK 660 ELVSASAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-32 | 350 | 669 | 44 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028065769.1 | 0.0 | scarecrow-like protein 6 | ||||
Swissprot | O81316 | 1e-140 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A4D8ZRK6 | 0.0 | A0A4D8ZRK6_SALSN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066799 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6253 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-129 | GRAS family protein |
Publications ? help Back to Top | |||
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