PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00645g06001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 300aa    MW: 33557.5 Da    PI: 6.4278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00645g06001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017174196123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C+k+F++   L  H  +H
  Peinf101Scf00645g06001.1 174 YRCETCNKVFRSYQALGGHRASH 196
                               9***********99999998887 PP
2zf-C2H212.50.00044218240123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp C ++Fs+   L  H rtH
  Peinf101Scf00645g06001.1 218 HECPVCFRVFSSGQALGGHKRTH 240
                               79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.9527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139126.8E-4728IPR007087Zinc finger, C2H2
PfamPF139126.6E-12174198IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325174201IPR007087Zinc finger, C2H2
SMARTSM003550.014174196IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.47E-9174240No hitNo description
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-4215240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.452218240IPR007087Zinc finger, C2H2
PfamPF139125.9E-11218240IPR007087Zinc finger, C2H2
SMARTSM003550.15218240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEKHKSCKLC FRKFANGRAL GGHMRSHMMN LYVQKQQMSD EMEYSIPSSS WSSGEVAAGD  60
ADDSGVVLPD KESETESSRN QARFRRSKRS RKSRIVKVKE YSSLVDTEPV SSISENSPEE  120
DVAHCLMMLS RDKWIKQEFD DYSDDDEEEE KSEDSGVLVK VTNSTKIKGS RGKYRCETCN  180
KVFRSYQALG GHRASHKKIK VSNSSTNQVE NVVEEKIHEC PVCFRVFSSG QALGGHKRTH  240
VIGAAASVNV PVLEKPEFSR TGASLIDLNL PPPVEDDDEI ISQVEVSTVS EAELVNPIKY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0066050.0AB006605.1 Petunia x hybrida mRNA for ZPT3-3, complete cds.
GenBankAB0351330.0AB035133.1 Petunia x hybrida gene for C2H2 zinc-finger protein ZPT3-3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347910.11e-126PREDICTED: zinc finger protein ZAT9-like
TrEMBLO220900.0O22090_PETHY; C2H2 zinc-finger protein ZPT3-3
STRINGPGSC0003DMT4000669391e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-58C2H2-like zinc finger protein