PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00642g03015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 917aa    MW: 101451 Da    PI: 7.0632
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00642g03015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.4e-18322422199
                               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                               f+kvl+ sd+++ grlvlpk +ae++       ++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+
  Peinf101Scf00642g03015.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfppiA--QPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDT 403
                               99**************************543..556667***************9989999999***9.**************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F++++  e++l+++++++
  Peinf101Scf00642g03015.1 404 VIFSRMD-PEGKLLMGFRKA 422
                               ****876.888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-29314426IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-19319421IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-22320421No hitNo description
SMARTSM010191.3E-19322423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152322423IPR003340B3 DNA binding domain
PfamPF023622.0E-15322422IPR003340B3 DNA binding domain
PROSITE profilePS5105014.202586636IPR011124Zinc finger, CW-type
PfamPF074963.0E-11591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MDSKICMNGL CGATCSSVEL KKGWPLRSGD FATLCDKCGT AYEQLVFCDL FHSEESGWRE  60
CISCGKRLHC GCIASSSLLE LLDSGGINCV SCARSRQLLA RPNHEKPKAF GTSNSNSVGE  120
TASTSLGSQM NGSEPNKREG FDSIDPTLLL QHQNENTNTS MDQIKLEEAF HPTGAGSTFS  180
SNLYQATAES SKNGKLDAYN GYIGVKEIPG SLVQTNLSIA LSAPSANTKL YPATVDEGDL  240
NKTISSLQQG SRSRNILPKP PKSTSTVGPD TNAGIMSQIR VARPPVEGRI KNQLLPRYWP  300
RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP IAQPEGLPLR  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVIFSRMD PEGKLLMGFR  420
KASTVNSTQE NRLSAIPKNV FSAEPNSFSA MPENLPLVRG YSGFLQSFKG SRESSVNLSS  480
KHFSSGDFGW YLTEKNGGRN ADDAFSPSMP VSERKRSRNI GSKSKRLLID SHDALELKLS  540
WEELQDMLRP PLSTQPTTVT IEDQEFEEYD QPPVLGKRSI FTVRLSGEQE QWAQCDNCFK  600
WRRLPADYLL PPKWTCQDNI SDHGRCSCSV PDDLTPRELE NLLKMDKGEA RKFASDLKKQ  660
RSAAGQRTMQ AHDSSDVDSQ ANGIGRAGEM REPGAPSVAT TTKHPRHRPG CSCIVCIQPP  720
SGKGKHNPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI DQRNQLMWSS KEETEVDSFS  780
RQVKPEINPT DKERSGSETL ARDHSSNQLQ KLPEISKSPL DLNCHPNRED RGSSHVSMMS  840
LLQQASLPLE TYLRQNGLTS LVSEQQGSSG SQGLPTDTRE TEIHVHEDQG FASTTQEQEK  900
DVAEENSEPD QSGKDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A6e-673004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1738749KRRFKTLMMRKK
2738751KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362351.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G2YL690.0A0A2G2YL69_CAPAN; Uncharacterized protein
STRINGXP_009768196.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]