PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00633g02009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 463aa    MW: 51562.9 Da    PI: 8.9223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00633g02009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-0595117123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C+ C+k F r  nL+ H r H
  Peinf101Scf00633g02009.1  95 FICEVCNKGFQREQNLQLHRRGH 117
                               89*******************88 PP
2zf-C2H211.50.0009171193123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+ k H +++
  Peinf101Scf00633g02009.1 171 WKCDKCSKKYAVQSDWKAHSKSC 193
                               58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.67E-794117No hitNo description
Gene3DG3DSA:3.30.160.604.9E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9995117IPR007087Zinc finger, C2H2
SMARTSM003550.005295117IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-595117IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM0035588136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.67E-7166191No hitNo description
SMARTSM00355150171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSNLSSGNSC DEGTEELAHE TNSNVLSCTR TSCNDGSSVI QQEQALPNKK RKLPGNPVQR  60
KRKKGFSGKF CLAFADPTAE VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP  120
WKLKQKTSTE IKKRVYICPE PTCIHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY  180
AVQSDWKAHS KSCGSKEYKC DCGTIFSRRD SFVTHRAFCD ALTEENNKVN QGLASNTGPG  240
SASSTQVPEL MSNILNLPEI RNSNMKMPQI PPRPLNMDRS IFGTSSPNMS ATALLQQAAQ  300
MGSTVNSSMI NSPIIVQKGY SSLFNGMLVP SQSDHDQTQT GNSVHGFVGS ILHNGTQETF  360
SELLNSNRGD NEKNSRMQNE GWCINGLFNE ENQRLLSNEG CDNNLTKVNG ESANESLTLD  420
FLGIGGMRQR NFHEMQQQQQ KMSFEQQKVS QQSNQGLSSM WDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33167230366Zinc finger protein JACKDAW
5b3h_F3e-33167230366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14963KRKLPGNPVQRKRKK
25963RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937771e-135AC193777.1 Solanum lycopersicum chromosome 1 clone C01HBa0051C14, complete sequence.
GenBankHG9754401e-135HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-135HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628988.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_016515957.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A1S4DRB60.0A0A1S4DRB6_TOBAC; protein indeterminate-domain 2-like
STRINGXP_009628988.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.12e-92C2H2-like zinc finger protein